Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13220 1003 / 0 MSR02, AtABCG26, ABCG26, WBC27 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) AT5G06530 523 / 5e-177 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT3G52310 517 / 4e-174 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT1G31770 492 / 3e-166 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT3G25620 467 / 3e-156 ABCG21 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) AT4G27420 453 / 3e-151 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) AT1G71960 419 / 1e-137 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) AT2G01320 246 / 3e-71 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT2G13610 219 / 5e-62 ABCG5 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) AT3G21090 211 / 8e-59 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016649 [exp] 1349 / 0 AT3G13220 1055 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) Lus10015994 [exp] 514 / 5e-175 AT5G06530 1033 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Lus10034775 [exp] 487 / 3e-164 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10034387 [exp] 486 / 3e-163 AT3G25620 791 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Lus10035692 [exp] 479 / 2e-161 AT1G31770 1001 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10033314 [exp] 476 / 4e-161 AT1G31770 941 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10037283 [exp] 468 / 4e-157 AT1G31770 984 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10025596 [exp] 468 / 1e-156 AT4G27420 687 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Lus10025597 [exp] 459 / 2e-153 AT4G27420 707 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G370600 [exp] 1118 / 0 AT3G13220 1012 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) Potri.011G094650 [exp] 835 / 0 AT3G13220 743 / 0.0 ATP-binding cassette G26, ABC-2 type transporter family protein (.1) Potri.016G065900 [exp] 551 / 0 AT5G06530 1139 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.006G199500 [exp] 505 / 6e-170 AT5G06530 1013 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.010G131900 [exp] 484 / 1e-162 AT3G25620 852 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Potri.004G236500 [exp] 483 / 1e-162 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.003G046800 [exp] 464 / 4e-155 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.001G404000 [exp] 445 / 3e-148 AT4G27420 690 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.011G123200 [exp] 439 / 6e-146 AT4G27420 737 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.013G111900 [exp] 417 / 7e-137 AT1G71960 795 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10022564 pacid=23166892 polypeptide=Lus10022564 locus=Lus10022564.g ID=Lus10022564.BGIv1.0 annot-version=v1.0 ATGGAAGGAAACAATCGAGATGAGCAAATTGATGAGGACATGACATCCCCACCAACAATGGGGTCCATGCAAATTGCAGGCAGCAATGGCTTCGCTCACA ACATTGAGTTCATGTCTCAAGCTGCTTACCTTAGAAACAGGTACTCTGAGATTGACATTGAAGATGAAAACACCCTTAGCCTCAGCAAGGATCAACCTCT TCCAATCTTCCTCAAGTTTGAGGATGTGGAGTACAAGGTTAGGAACAGCAGCCAAGGGGGAGGTTCTTCGAGGAATCCGGTGAAGGCGGTGGTGTCCAAG GTGGCATCACAGCTGAACTTGGAGCAAGACAACTATAAGCAAATACTTAAAGGGATAACAGGAAGCATTGGTCCAGGTGAGATCCTTGCTCTGATGGGTC CTTCTGGGAGTGGCAAAACAACCTTGTTGAAGATCATTGGAGGCAGACTTACTGACAATGTCAAAGGCAAAATTACTTACAATGACATTCCTTACAATTC TGCCCTCAGGAGAAGGGTTGGATTCGTGACTCAAGACGATGTGCTGCTTCCTCAACTAACCGTGGAGGAAACATTGGTGTTTGCTGCATTCTTAAGGCTC CCTGGGAATATGAGCCGCCAGCAGAAGTATGCCAGAGTTGAGATCATCATCAAGGATCTAGGTTTGGAGAGATGTCGGCACACGAGAATTGGGGGAGGAT TCATCAAAGGAATATCAGGAGGAGAAAGGAAAAGAACCAGCATTGGGCATGAGATCCTTGTTGATCCTTCATTGTTATTGCTTGATGAACCAACCTCGGG CCTTGACTCCACCTCAGCGAATCGCCTTCTCCAGATTCTACAAGGACTAGCTAAGGCAGGAAGGACAATTATCACAACGATCCATCAGCCATCCAGCAGA ATCTTCCACACGTTTGATAAGATTCTGCTGATATCAGATGGATATCCAGTTTACAACGGCAGAGCTAGAGACTCGATGGAGTATTTCGCTTCGTTGAGGT TCATGCCAGAGATAGCTATGAACCCAGCTGAGTTCATGCTTGATTTAGCAACTGGACAAGTCAATGACATTAGTGTGCCACAGGATGTGTCCCCTCTCAG GGCTCAGAATTCTGAGAAGGAAGTTGTCAAATACCTTCAAGCAATGTACAAGACACAGCTGGAGCCGAAAGAGAAGGAAGAGAACCATCGAAACAACAAG GCACCCGGGCATCTGCAGATAGCGGTCCAAGTGAAGAAAGAGTGGACATCAAGTTGGTGGGAACAATTCAGAATAATATACAAGAGAACATTCAAGGAAA GGTGTAGGGATTACTTTGACAAGCTGAGACTAGTCCAAGCACTTGGAATTGCTGTCCTACTTGGCCTTCTCTGGTGGAAATCTCAAACTGGTACCGAGGC TCAGCTCAGGGATCAGATTGGTCTGATGTTCTACATATGTATATTCTGGACATCGTCGTCTATATTTGGGGCGGTGTACGTGTTCCCGTTTGAGAAGATA TACATAGTGAAGGAAAGGAAAGCAGACATGTACCCATTGAGTGTGTACTATGTATGTAGTACACTGTGTGACATGGTGGCTCATGTCTTCTACCCAACAT TCTTCACTATCATAGTCTATTTCATGGCTGGTTTCAAGAGAACTGTACCTTGCTTCTTCTTGACTTTGCTTGCCATCCTTCTCATTGCCATAACTAGCCA AGGTGCAGGGGAGCTATTTGGGGCAGCAAGTTTGAGCATAAGAAGAGCAGGGATGTTTGCTTCTCTTGTACTAATGTTGTTTCTCCTCACTGGTGGCTAC TATGTCCAGCACATACCAAGGTTCATGCAATGGCTAAAGTACATGTCGTTTCTATACTACGGGTTTAGGCTGCTGCTGAAGGTGCAGTATGATGGGGACC AAATGTACGAGTGCGAAAGCAGCGGAGGGTGCAGACCACTGCAGAGCTCACCATCCTTCGACACAGTGAACCTCAAAGGTGGACTCCAAGAGGTTTGGGT GATGTTGGCTATGGCGCTTGGATTCCGCTTGCTTGCCTACTTCTGCCTCCGCAAACGCATTGGAGCTTCCCACTTTTAG
AA sequence Show only first row Show all	>Lus10022564 pacid=23166892 polypeptide=Lus10022564 locus=Lus10022564.g ID=Lus10022564.BGIv1.0 annot-version=v1.0 MEGNNRDEQIDEDMTSPPTMGSMQIAGSNGFAHNIEFMSQAAYLRNRYSEIDIEDENTLSLSKDQPLPIFLKFEDVEYKVRNSSQGGGSSRNPVKAVVSK VASQLNLEQDNYKQILKGITGSIGPGEILALMGPSGSGKTTLLKIIGGRLTDNVKGKITYNDIPYNSALRRRVGFVTQDDVLLPQLTVEETLVFAAFLRL PGNMSRQQKYARVEIIIKDLGLERCRHTRIGGGFIKGISGGERKRTSIGHEILVDPSLLLLDEPTSGLDSTSANRLLQILQGLAKAGRTIITTIHQPSSR IFHTFDKILLISDGYPVYNGRARDSMEYFASLRFMPEIAMNPAEFMLDLATGQVNDISVPQDVSPLRAQNSEKEVVKYLQAMYKTQLEPKEKEENHRNNK APGHLQIAVQVKKEWTSSWWEQFRIIYKRTFKERCRDYFDKLRLVQALGIAVLLGLLWWKSQTGTEAQLRDQIGLMFYICIFWTSSSIFGAVYVFPFEKI YIVKERKADMYPLSVYYVCSTLCDMVAHVFYPTFFTIIVYFMAGFKRTVPCFFLTLLAILLIAITSQGAGELFGAASLSIRRAGMFASLVLMLFLLTGGY YVQHIPRFMQWLKYMSFLYYGFRLLLKVQYDGDQMYECESSGGCRPLQSSPSFDTVNLKGGLQEVWVMLAMALGFRLLAYFCLRKRIGASHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13220		MSR02, AtABCG26...	ATP-binding cassette G26, ABC-...		Lus10022564 [exp]	0	1
AT4G31690	B3	REM9	Transcriptional factor B3 fami...		Lus10042406 [exp]	14.4	0.7081
AT1G27940		ABCB13, PGP13	ATP-binding cassette B13, P-gl...		Lus10017271 [exp]	16.1	0.6774
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10004918 [exp]	22.5	0.6882
AT5G54380		THE1	THESEUS1, protein kinase famil...		Lus10038595 [exp]	25.9	0.6564
AT1G69710			Regulator of chromosome conden...		Lus10036737 [exp]	38.0	0.6551
					Lus10038294 [exp]	43.7	0.6658
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009620 [exp]	44.0	0.6594
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10040149 [exp]	45.2	0.6348
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10035423 [exp]	49.5	0.6192
					Lus10026794 [exp]	58.8	0.6462

Compare expression of checked genes

Lus10022564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.