Plant FIBer expression Database

Lus10022565 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G55960 774 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016650
[exp]
1019 / 0 AT5G55960 917 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G370500
[exp]
845 / 0 AT5G55960 921 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01594 AI-2E_transport AI-2E family transporter
Representative CDS sequence
>Lus10022565 pacid=23166933 polypeptide=Lus10022565 locus=Lus10022565.g ID=Lus10022565.BGIv1.0 annot-version=v1.0
ATGGAGTTAGTTCCATACGCCGACCCTAATTCCAGCCCACCGCCGCCGATGCCGGAGTCTTCTCCACCGCCCTCATCGTCTTCTTCTCCTCTGCCGTGGC
AGGATATGTTCAGATCCGCCTCATTCAACAAACCTTCCACGTCGGCGCCACCACCTCCTCCGTCTTCTGCTAAGCCTCCAACTCCATCTGGGTCCTCGAA
ATTCGGTGAGCCAGCTCATAAAGACAGCTTCTTGGGAGATCCACAGGTACGCCTCGCTGTCTGCATAGCCATGGCCCACGCCGGCCTCGCCTTCACAATC
TTCGTCCTATATTTTGTCTGTAAGCTCCTTCAGGAGTACCTGCGCCCAATTCAGTGGGCGATTCTGTGCTCCATTCCCTTGAGGGGAATTCAAGAGGCCC
TCGTCTCCTTTTGGAATGAGCCTCTCAAGTTAGGGCTCACAGAGACTATCCTCGCCATCCCCAGTGCTATCCTCGAGGTGTTCGTCGGCACCCTTGTTGA
CATCAAGGAACTCTGTCTTAGGGTTTTGCTCAGGAAGGACAAGAAGGACCGAATCAAGAGGAATCGAAGTGGATTTTCCAAGTTAGTGAGGTGGTTAGTC
TCGTTTGGTGTGTTTGTGATTGCTTATGAGAATATTGGTGCGACGGGGGCACTTTCCATTTTAGGGTTAGGGTTTTTATGCAGTACCAAGACTGTGAATT
CCACATTCTCTGCTGTAACCTCGTTTAGGAGTAACAGCTTCAAGCGCAGTGTTATCAGTGCATTCTTTACTAAAGGGATATTGAAGCGACTCAAGACCAT
CGTTGCAGTTGGCTTGATCATTGGTATGATTGTTGGATTCTTGGTTGGATTGATATTCTTCTCCTACAAGATTGGTGTCGAAGGCAAAGACGCTGTGATC
TCGTTGAAATCGCACGTGGAAGAGAGCAATTACGCTGAGAAATTTGGGGTTAGGAAGTGGATGGATGATAATGATGTGCCTGGGATGGTTGATAGGTACA
CAACCAAGTTCTACGAGACTGTTTCTGAACAAATAGATAGTCTTGCAATGCAGTACAATGTGACTGAATTAGTCACCGGGATCAAGCATTTCGTCATTAC
TCCTCCAGCTAATTCGTCTGAGCAGTCGACAGTGATAATGAGCCCGACTCCATACACGAAGAGGCTCTTGACCTTGCGAAAAAAACTGACCGACCGACAA
TGGGGGGATATCTACACGGAACTGGATGCAATTGTCAGGGAACTGATAATCAGCCGCGAGGATATACTTGAGAAGGCAAAGGCATTTGCTCTTCGGGGAA
TGGATGTTTCCCAACGCGTATTCGCCAGCAGTGCATCAGTACTAGGTGGTGGTGCTAAACTGATGTTGTCCATTGGGAACTCTATCATATCTGGAGCAGC
TGAGGTTTTCAACTTTGTATCAATGTCAATGGTGTTCTTCTGGGTATTGTATTACCTGATAACATCAGAGTCAGGTGGGGTGACCGAGCAGGTGATGTGC
ATGTTACCAATGAGGAAATCAGTAAGGAGTAGATGCGTAGAGGTACTTGACAAAGCCATTTCAGGAGTTCTTCTGGCTACAGCTGAGCTTGCTTTCTTCC
AAGGATGCATAACATGGCTTTTGTTTAGACTCTACAAAATCCACTTCCTATACGTTTCTACCGTTCTTGCATTCATAAGTCCGCTATTACCAATATTCCC
ACCATGGTTTTCGACAATTCCAGCAGCAGTGCAGCTGGTGCTTGAAAGCAGATACATTCTAGCGATTAGCCTCTCAGTAATTCATCTTCTGCTGATTGAT
TATGGTGCATCTGAAATTCAAGAGGATATACCGGGTCACAACGAATACCTCACGGGACTTAGCATCATTGGCGGGATGACATAA
AA sequence
>Lus10022565 pacid=23166933 polypeptide=Lus10022565 locus=Lus10022565.g ID=Lus10022565.BGIv1.0 annot-version=v1.0
MELVPYADPNSSPPPPMPESSPPPSSSSSPLPWQDMFRSASFNKPSTSAPPPPPSSAKPPTPSGSSKFGEPAHKDSFLGDPQVRLAVCIAMAHAGLAFTI
FVLYFVCKLLQEYLRPIQWAILCSIPLRGIQEALVSFWNEPLKLGLTETILAIPSAILEVFVGTLVDIKELCLRVLLRKDKKDRIKRNRSGFSKLVRWLV
SFGVFVIAYENIGATGALSILGLGFLCSTKTVNSTFSAVTSFRSNSFKRSVISAFFTKGILKRLKTIVAVGLIIGMIVGFLVGLIFFSYKIGVEGKDAVI
SLKSHVEESNYAEKFGVRKWMDDNDVPGMVDRYTTKFYETVSEQIDSLAMQYNVTELVTGIKHFVITPPANSSEQSTVIMSPTPYTKRLLTLRKKLTDRQ
WGDIYTELDAIVRELIISREDILEKAKAFALRGMDVSQRVFASSASVLGGGAKLMLSIGNSIISGAAEVFNFVSMSMVFFWVLYYLITSESGGVTEQVMC
MLPMRKSVRSRCVEVLDKAISGVLLATAELAFFQGCITWLLFRLYKIHFLYVSTVLAFISPLLPIFPPWFSTIPAAVQLVLESRYILAISLSVIHLLLID
YGASEIQEDIPGHNEYLTGLSIIGGMT

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G55960 unknown protein Lus10022565
[exp]
0 1
AT2G38090 MYB MYB-R Duplicated homeodomain-like su... Lus10035518
[exp]
1.4 0.8623
AT4G35320 unknown protein Lus10022985
[exp]
4.9 0.8369
AT5G62690 TUB2 tubulin beta chain 2 (.1) Lus10035497
[exp]
4.9 0.8447
AT5G55960 unknown protein Lus10016650
[exp]
5.3 0.7980
AT1G64390 ATGH9C2 glycosyl hydrolase 9C2 (.1) Lus10032377
[exp]
6.3 0.8227
AT1G61100 disease resistance protein (TI... Lus10018471
[exp]
9.8 0.7876
AT4G05020 NDB2 NAD(P)H dehydrogenase B2 (.1),... Lus10018427
[exp]
10.4 0.7779
AT5G66920 SKS17 SKU5 similar 17 (.1) Lus10016770
[exp]
11.5 0.8125
AT4G35320 unknown protein Lus10001621
[exp]
13.2 0.8138
AT1G27200 Domain of unknown function (DU... Lus10036676
[exp]
14.9 0.7793

Lus10022565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.