Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13200 276 / 1e-94 EMB2769 EMBRYO DEFECTIVE 2769, Cwf15 / Cwc15 cell cycle control family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016651 [exp] 345 / 1e-121 AT3G13200 311 / 3e-108 EMBRYO DEFECTIVE 2769, Cwf15 / Cwc15 cell cycle control family protein (.1) Lus10018143 [exp] 85 / 9e-21 AT3G13200 72 / 2e-16 EMBRYO DEFECTIVE 2769, Cwf15 / Cwc15 cell cycle control family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G370366 [exp] 299 / 1e-103 AT3G13200 247 / 6e-83 EMBRYO DEFECTIVE 2769, Cwf15 / Cwc15 cell cycle control family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04889 [flax] [poplar] Cwf_Cwc_15 Cwf15/Cwc15 cell cycle control protein
Representative CDS sequence Show only first row Show all	>Lus10022566 pacid=23166931 polypeptide=Lus10022566 locus=Lus10022566.g ID=Lus10022566.BGIv1.0 annot-version=v1.0 ATGACGACTGCAGCTCGACCAACTTGGGCCCCTGCCAAAGGTGGTAATGAACAAGGTGGTTCTCGAATTTTTGGTGCATCACAGAAGTTTTCATCAAGGG ACCTTGCTGCACATACAACTCTCAAGCCAAGGAGGGAAGGCCAAGATACTCAGGATGAACTGGAGAAACGGAACCTCCGTGAGGAGCTTGAAGAACGTGA AAGAAGGCATTTCTCGTCGAAGGACAAGTCATACAATGATGACAGAGCCCGTAGTAGAAGGGGCAGCCAGCTTCTCCTGGAAGGTTCGAAAAGAGATGCA GAAGAACGTATAATTCCTCGCAGTGTTGATGCCGATGATTCTGATGGCGAGATAAACAACAGCGATGAAAGTGATGATGAAGACGATGACGATGAAGACG ACACCGAAGCTTTGTTGGCTGAGCTGGAGAGAATAAAGAAGGAAAGGGCAGAAGAAAAGCTCCGCCAGGAGCAAGAACGTGCAGTTGAGGAGCTGAAAGT TAAAGAAGAACAGCTTCTCCGTGGAAACCCATTGATGAACAACAACCCAACATCCTTCGGTGTGAAGAGGAGGTGGGATGATGATGTGGTTTTCAAAAAC CAGACAAGAGGAGAAACCAAAACACCAAAACGTTTCATCAACGACACCATCAGGAATGATTTCCATCGCAGATTCTTGCACAAGTACATGAAATAG
AA sequence Show only first row Show all	>Lus10022566 pacid=23166931 polypeptide=Lus10022566 locus=Lus10022566.g ID=Lus10022566.BGIv1.0 annot-version=v1.0 MTTAARPTWAPAKGGNEQGGSRIFGASQKFSSRDLAAHTTLKPRREGQDTQDELEKRNLREELEERERRHFSSKDKSYNDDRARSRRGSQLLLEGSKRDA EERIIPRSVDADDSDGEINNSDESDDEDDDDEDDTEALLAELERIKKERAEEKLRQEQERAVEELKVKEEQLLRGNPLMNNNPTSFGVKRRWDDDVVFKN QTRGETKTPKRFINDTIRNDFHRRFLHKYMK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10022566 [exp]	0	1
AT1G67170			unknown protein		Lus10019966 [exp]	1.4	0.9177
AT4G01710		ARPC5, CRK	CROOKED, ARP2/3 complex 16 kDa...		Lus10028192 [exp]	2.4	0.9043
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Lus10004374 [exp]	2.8	0.9137
AT4G22380			Ribosomal protein L7Ae/L30e/S1...		Lus10025435 [exp]	3.0	0.9105
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Lus10039656 [exp]	3.9	0.9051
AT3G18430			Calcium-binding EF-hand family...		Lus10010775 [exp]	4.0	0.8777
AT3G55920			Cyclophilin-like peptidyl-prol...		Lus10030408 [exp]	5.7	0.8964
AT1G29850			double-stranded DNA-binding fa...		Lus10004540 [exp]	6.3	0.8714
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Lus10019406 [exp]	7.5	0.9095
AT1G67170			unknown protein		Lus10015495 [exp]	11.2	0.8700

Compare expression of checked genes

Lus10022566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.