Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55970 406 / 5e-142 RING/U-box superfamily protein (.1.2) AT4G26580 397 / 2e-138 RING/U-box superfamily protein (.1.2) AT1G80400 166 / 2e-47 RING/U-box superfamily protein (.1) AT4G32600 157 / 7e-44 RING/U-box superfamily protein (.1) AT3G61180 101 / 9e-24 RING/U-box superfamily protein (.1) AT4G11680 97 / 2e-22 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G68070 94 / 1e-21 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G12760 88 / 2e-19 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) AT2G01735 87 / 7e-19 RIE1 RING-finger protein for embryogenesis (.1) AT1G63170 81 / 7e-17 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016652 [exp] 474 / 6e-168 AT5G55970 347 / 1e-118 RING/U-box superfamily protein (.1.2) Lus10011475 [exp] 175 / 1e-50 AT1G80400 459 / 9e-161 RING/U-box superfamily protein (.1) Lus10013144 [exp] 161 / 1e-45 AT4G32600 477 / 2e-167 RING/U-box superfamily protein (.1) Lus10023112 [exp] 159 / 2e-44 AT1G80400 447 / 1e-155 RING/U-box superfamily protein (.1) Lus10008106 [exp] 137 / 5e-37 AT4G32600 410 / 1e-141 RING/U-box superfamily protein (.1) Lus10033075 [exp] 119 / 7e-31 AT4G32600 189 / 2e-56 RING/U-box superfamily protein (.1) Lus10017750 [exp] 119 / 9e-31 AT4G32600 192 / 1e-57 RING/U-box superfamily protein (.1) Lus10036569 [exp] 102 / 3e-24 AT3G61180 387 / 1e-133 RING/U-box superfamily protein (.1) Lus10041359 [exp] 102 / 4e-24 AT3G61180 400 / 6e-139 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G371200 [exp] 446 / 1e-157 AT5G55970 424 / 3e-149 RING/U-box superfamily protein (.1.2) Potri.011G094800 [exp] 424 / 5e-149 AT5G55970 412 / 1e-144 RING/U-box superfamily protein (.1.2) Potri.006G247000 [exp] 161 / 1e-45 AT4G32600 498 / 1e-175 RING/U-box superfamily protein (.1) Potri.018G034400 [exp] 159 / 6e-45 AT4G32600 464 / 7e-162 RING/U-box superfamily protein (.1) Potri.014G075000 [exp] 96 / 5e-22 AT3G61180 315 / 1e-105 RING/U-box superfamily protein (.1) Potri.002G155200 [exp] 93 / 6e-21 AT3G61180 366 / 3e-125 RING/U-box superfamily protein (.1) Potri.008G134900 [exp] 92 / 1e-20 AT1G68070 392 / 2e-136 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.003G123300 [exp] 91 / 4e-20 AT1G12760 400 / 7e-138 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) Potri.010G106300 [exp] 87 / 6e-19 AT1G68070 412 / 2e-144 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.019G130100 [exp] 64 / 1e-11 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10022567 pacid=23166908 polypeptide=Lus10022567 locus=Lus10022567.g ID=Lus10022567.BGIv1.0 annot-version=v1.0 ATGGAGGGTCAGGAGTCGCCAGTCTTTGAAACAAAGCTAAGCTTTGATGGACGGTTGATTCTTGGTCACCATCTTGAAACCCAACCTTCACCTTCCTCCT GTTCTCTATCCCCAAATTCTGAAGAAGCTGGAGAAGATGTAGTAGTACCGGTCTTAAGCAGCAGAGCTACTGCACAATATTCCCCTCTTTCATCCTTGTT GATACGAGCAGCAATGAGGATTTCCAGAGCCAGATGGTTCACCTTTTTAAGAAGAGTTTTCCACTACCAGAATGGCTCAAGGTCTGATCTTGGCTCCAAC CCTTTCAATTCCTGGACTTGGATGGTTTTGGAGCTCATAACTTTGGTCATTCAACTCATTGTTAGTGGTTTCACTCTAGCAGTTTCTAAAACTGAGAAAC CTGTTTGGCCCATGAGGATTTGGATCCTTGGTTATGACATTGGTTGTGTCCTCAGCCTGCTACCACTCTACGGCCGATACCGGCAATTTTATGGCTCTCA GGGACAAGGCTTCCCAATTCCCGATCTAGAGCAACAAAGACCCAGTGAGGATTCCAGTTCGTACCGGTGCTCCCACCTGATGGACAAATGCAGGACTTCA CTTGAACTGTTCTTTGCAATCTGGTTTGTGATGGGGAACGTTTGGATCTTTGACTCACGATTAGGATCCATCAACCGAGCTCCTAAGCTGAATGTGCTAT GTGTCTCCCTTCTCACCTGGAATGCAATCTGCTATTCGTTCCCATTCCTATTGTTTCTTCTTCTGTGTTGTTGTGTCCCTCTCATCAGTAGCTTTCTCGG TTACAACATGAATATGGGCTCAGCAGACAAAGCTGCATCAGATGATCAAATCTCCAGCCTTCCACGTTGGCAGTACAAAGCAGTCGGCACATCCAATATA CTGGACGATGGTGATGATCAAGAATCAAGTTTGACCCCTGCAAGCGAAGAATGTTGCATTTGTCTATCCAAATACAAAGAAAAAGAGGAAGTAAGAGAGC TACCATGTTTACATACATTCCACCTCAAATGTGTGGATCAATGGCTTAGAATCATATCATGTTGCCCTCTCTGCAAACAAGAACTGAAGAGATAG
AA sequence Show only first row Show all	>Lus10022567 pacid=23166908 polypeptide=Lus10022567 locus=Lus10022567.g ID=Lus10022567.BGIv1.0 annot-version=v1.0 MEGQESPVFETKLSFDGRLILGHHLETQPSPSSCSLSPNSEEAGEDVVVPVLSSRATAQYSPLSSLLIRAAMRISRARWFTFLRRVFHYQNGSRSDLGSN PFNSWTWMVLELITLVIQLIVSGFTLAVSKTEKPVWPMRIWILGYDIGCVLSLLPLYGRYRQFYGSQGQGFPIPDLEQQRPSEDSSSYRCSHLMDKCRTS LELFFAIWFVMGNVWIFDSRLGSINRAPKLNVLCVSLLTWNAICYSFPFLLFLLLCCCVPLISSFLGYNMNMGSADKAASDDQISSLPRWQYKAVGTSNI LDDGDDQESSLTPASEECCICLSKYKEKEEVRELPCLHTFHLKCVDQWLRIISCCPLCKQELKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55970			RING/U-box superfamily protein...		Lus10022567 [exp]	0	1
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10007296 [exp]	2.2	0.9772
AT5G55970			RING/U-box superfamily protein...		Lus10016652 [exp]	3.2	0.9769
AT5G45840			Leucine-rich repeat protein ki...		Lus10031860 [exp]	3.5	0.9730
AT1G27500			Tetratricopeptide repeat (TPR)...		Lus10002376 [exp]	6.5	0.9428
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10029245 [exp]	7.2	0.9588
AT5G42710			unknown protein		Lus10010807 [exp]	7.5	0.9551
AT5G58300			Leucine-rich repeat protein ki...		Lus10035012 [exp]	8.0	0.9227
AT1G29200			O-fucosyltransferase family pr...		Lus10029239 [exp]	8.5	0.9409
AT1G07120			unknown protein		Lus10031863 [exp]	8.8	0.9481
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Lus10031290 [exp]	8.9	0.9477

Compare expression of checked genes

Lus10022567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.