Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23910 336 / 2e-112 unknown protein AT3G24255 313 / 3e-103 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1), RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016653 [exp] 820 / 0 AT3G23910 328 / 3e-109 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G317900 [exp] 456 / 4e-159 AT3G23910 380 / 2e-129 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022568 pacid=23166912 polypeptide=Lus10022568 locus=Lus10022568.g ID=Lus10022568.BGIv1.0 annot-version=v1.0 ATGCACGCAGAGATGGAGAAGGTCACTTCCTCCTCAGACGCGGAGCCTCTCGATCTCGAAGCAATTCGAAGTAGGATTACTGAGCTCGAAGAAGTTTACA AGAGCTGCAATGATGACGACATGGTCACTTCCGATTCGGACGAGTTAATCAGAGATTGCGCCATTCAACTGGAGAGTAAAGTCGACCAGATTATGGCGGA TTTCACCGACGTCAGTTTCTTGGGGATTGAAGATTTAGATTTGTACTTGGAGCACTTGAAAGACGAGCTGAGTGCGGCGGAGGCTGAGAGTGCTAAGATC TCTACTGAAATTGAACTTCTCAATACAACCAATCTCCAAGATTCCAGTGGACTAGAGAAGGATCTTGAAGAGTTGAAGTATTCATTAGACTGTATTTCCT CAGAGGACTCACCCCTAGGAAACGATGGTCCACAGGATGCTTGCTCATCGAATGGAGATGGGCAATTAAATTCATTACACGCACCTTATGATGACGAGTT TGAGATTTTGAAGCTTGAAAATCAGATTGAGGAAAACAAGATAAAATTGAAGTCCTTGCAAGATCTTGACTCTTCATTCAAGAGGTTTGATGCCTTGGAA CAAATTGAAAAGGCATTGTCAGGTCTAGAAGTCACTGAAGTTGATGGAACCTGCATTAAATTGTCGGTGAAGACGTATACTCCAAACTTGGGAGATATTT TATGCCAACAAAAGATTAAAGGTACTGCTGAGTTGTCTGAAGTACACCATGAATTTCTCATAGAAGTTTCCAACGAGACAATGGAACTTAAGAAGGTTGA GATGTTTCCAAATGATGTATTCATTGGTGATATCGTAGATGCTGCCAATTCGTTCAGGCAGTTGTTTGCAAATGATACACTTTCGGAGACAAGGTCCTCA TTGCAATGGTTTATACTGAAGGTGCAAGATAAAATAAGGGACTGCAATTTAAGAAGACGTGTGACGAAAAGTGCAAGCAAGTCGAGGCATTCCTTTGAAT ACTTGGATAAAGATGAAATCATAAAAGCTAATTTGGTTGGAGTTGATGCTTTGATAAAAGTACCCCCTGGATGGCCTTTAACAAATCCACCATTGAAATT GATGTCCCTCAAGAGCTTGAATCAGCAGAAGGAAGTCTCCTTAAGCTTTCTTTGCAAGATCGAGGAAACAGCGAATTCCCTGGATGCAAAGATTCGACAT CAATTGCTAAGCTTTGCAGATGAAATTGAGAAGGCGATACTGGAGAAAATGCGCCTGGAAATCCACTGTGGCAATGGTTCTTCCTCAAACATTTGA
AA sequence Show only first row Show all	>Lus10022568 pacid=23166912 polypeptide=Lus10022568 locus=Lus10022568.g ID=Lus10022568.BGIv1.0 annot-version=v1.0 MHAEMEKVTSSSDAEPLDLEAIRSRITELEEVYKSCNDDDMVTSDSDELIRDCAIQLESKVDQIMADFTDVSFLGIEDLDLYLEHLKDELSAAEAESAKI STEIELLNTTNLQDSSGLEKDLEELKYSLDCISSEDSPLGNDGPQDACSSNGDGQLNSLHAPYDDEFEILKLENQIEENKIKLKSLQDLDSSFKRFDALE QIEKALSGLEVTEVDGTCIKLSVKTYTPNLGDILCQQKIKGTAELSEVHHEFLIEVSNETMELKKVEMFPNDVFIGDIVDAANSFRQLFANDTLSETRSS LQWFILKVQDKIRDCNLRRRVTKSASKSRHSFEYLDKDEIIKANLVGVDALIKVPPGWPLTNPPLKLMSLKSLNQQKEVSLSFLCKIEETANSLDAKIRH QLLSFADEIEKAILEKMRLEIHCGNGSSSNI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23910			unknown protein		Lus10022568 [exp]	0	1
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10020603 [exp]	4.5	0.7682
AT4G18950			Integrin-linked protein kinase...		Lus10029277 [exp]	7.7	0.7470
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Lus10018127 [exp]	8.5	0.7977
AT4G13450			Adenine nucleotide alpha hydro...		Lus10014459 [exp]	9.4	0.7793
AT3G23910			unknown protein		Lus10016653 [exp]	9.6	0.7136
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10025213 [exp]	13.0	0.7672
					Lus10005948 [exp]	16.9	0.7414
					Lus10029449 [exp]	17.9	0.7695
AT1G59710			Protein of unknown function (D...		Lus10030804 [exp]	19.5	0.7699
AT5G37710			alpha/beta-Hydrolases superfam...		Lus10010983 [exp]	25.8	0.7657

Compare expression of checked genes

Lus10022568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.