Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07200 81 / 3e-19 RING/U-box superfamily protein (.1.2) AT5G48655 77 / 3e-17 RING/U-box superfamily protein (.1.2.3) AT3G27330 54 / 2e-08 zinc finger (C3HC4-type RING finger) family protein (.1) AT1G18660 50 / 2e-07 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) AT1G55250 47 / 4e-06 HUB2, HISTONEMONO-UBIQUITINATION2 histone mono-ubiquitination 2 (.1.2.3.4) AT5G05130 47 / 4e-06 DNA/RNA helicase protein (.1) AT5G44280 46 / 7e-06 ATRING1A ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) AT1G03770 45 / 1e-05 ATRING1B ARABIDOPSIS THALIANA RING 1B, RING 1B (.1.2.3) AT4G03510 44 / 2e-05 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT1G74990 42 / 3e-05 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016654 [exp] 261 / 6e-90 ND / Lus10022774 [exp] 91 / 2e-22 AT5G48655 153 / 7e-47 RING/U-box superfamily protein (.1.2.3) Lus10018271 [exp] 61 / 6e-12 AT3G07200 51 / 2e-08 RING/U-box superfamily protein (.1.2) Lus10040641 [exp] 53 / 6e-09 AT3G07200 46 / 1e-06 RING/U-box superfamily protein (.1.2) Lus10032119 [exp] 51 / 1e-07 AT3G27330 251 / 1e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10022324 [exp] 51 / 1e-07 AT3G27330 251 / 4e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10039001 [exp] 49 / 7e-07 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10019075 [exp] 48 / 1e-06 AT1G18660 583 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10015722 [exp] 48 / 2e-06 AT1G18660 667 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G148300 [exp] 90 / 6e-22 AT5G48655 77 / 6e-17 RING/U-box superfamily protein (.1.2.3) Potri.001G082200 [exp] 83 / 3e-19 AT3G07200 86 / 2e-20 RING/U-box superfamily protein (.1.2) Potri.002G245500 [exp] 80 / 2e-18 AT5G48655 154 / 2e-47 RING/U-box superfamily protein (.1.2.3) Potri.014G191400 [exp] 77 / 1e-17 AT5G48655 158 / 8e-49 RING/U-box superfamily protein (.1.2.3) Potri.001G336832 [exp] 53 / 2e-08 AT3G27330 235 / 2e-69 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.002G141300 [exp] 50 / 5e-07 AT2G44950 877 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Potri.012G068100 [exp] 49 / 1e-06 AT1G18660 679 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Potri.014G055800 [exp] 48 / 1e-06 AT2G44950 917 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Potri.006G035700 [exp] 48 / 2e-06 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.011G056300 [exp] 47 / 2e-06 AT5G44280 324 / 7e-106 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10022569 pacid=23166906 polypeptide=Lus10022569 locus=Lus10022569.g ID=Lus10022569.BGIv1.0 annot-version=v1.0 ATGACTCGCTATTGGAGAAGAGGTTGGGTTCCGGATCTCAACCACCGACCTCCCGTTAATGAGCCATCTCTAGATGGGTTGATTGGGTTCTCTATTTTGC CCGATTCAGTAGGTCAGAGTGGGGTTTTAACCTGTAGGCGGTTGGGTCATCTTGAGTTATTTGACGATGAGGTCGCCGTGATCTCTCCGAGGGCTTTCGC TCAGGCCAAGTGCAGTTCTACCAGAAACCCTAACCAGAGACTCCAAGATGCTTTGGGTGAAGCCGCCCCTGGTTTATTCAACGCTGGAATGATGATGTGC GGACATTGTAAAAGGAAAATGCCAGAAGGTGACATCGATCTAGTCCTAGAACTAGGGATCAGTAACAAGAAGGCAAAGAATGTTGCTGATCCTCAGGAAT TTCCTGCTCCTAAAGAATCCATCTACAGATGCCCTGTATGCATTAGTGATCTGGTAGAACCAACATCAACAAAATGTGGGCACATCTTCTGTAAAGAATG CTTAAGAAAATCTCTAGCGTCATCAAACAACAAATGTCCTACCTGTAGGCAGAAGGTTGGCAGACGCGGCATCTTCAGAGTTTACCTCCCCACTACAAAC TGA
AA sequence Show only first row Show all	>Lus10022569 pacid=23166906 polypeptide=Lus10022569 locus=Lus10022569.g ID=Lus10022569.BGIv1.0 annot-version=v1.0 MTRYWRRGWVPDLNHRPPVNEPSLDGLIGFSILPDSVGQSGVLTCRRLGHLELFDDEVAVISPRAFAQAKCSSTRNPNQRLQDALGEAAPGLFNAGMMMC GHCKRKMPEGDIDLVLELGISNKKAKNVADPQEFPAPKESIYRCPVCISDLVEPTSTKCGHIFCKECLRKSLASSNNKCPTCRQKVGRRGIFRVYLPTTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07200			RING/U-box superfamily protein...		Lus10022569 [exp]	0	1
AT3G57120			Protein kinase superfamily pro...		Lus10027054 [exp]	2.0	0.9381
AT4G27280			Calcium-binding EF-hand family...		Lus10031588 [exp]	2.0	0.9427
					Lus10018552 [exp]	2.8	0.9306
AT2G26530		AR781	Protein of unknown function (D...		Lus10032881 [exp]	3.5	0.9358
AT3G60460	MYB	DUO1	DUO POLLEN 1, myb-like HTH tra...		Lus10009780 [exp]	4.5	0.9090
AT4G27280			Calcium-binding EF-hand family...		Lus10033753 [exp]	5.5	0.9266
AT4G35600		Kin4, CX32, CST...	kinase 4, CONNEXIN 32, CAST AW...		Lus10008015 [exp]	5.9	0.9168
AT3G20600		NDR1	non race-specific disease resi...		Lus10011162 [exp]	7.3	0.9253
AT3G48360		ATBT2, BT2	BTB and TAZ domain protein 2 (...		Lus10042082 [exp]	8.5	0.8432
AT3G13130			unknown protein		Lus10012341 [exp]	8.5	0.9076

Compare expression of checked genes

Lus10022569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.