Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04920 704 / 0 ATSPS3F sucrose phosphate synthase 3F (.1) AT5G20280 491 / 1e-163 SPSA1, ATSPS1F sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) AT5G11110 479 / 3e-159 SPSA2, KNS2, ATSPS2F, SPS1 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1) AT4G10120 473 / 1e-156 ATSPS4F Sucrose-phosphate synthase family protein (.1.2) AT1G73370 103 / 6e-23 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) AT5G49190 102 / 8e-23 ATSUS2, SSA, SUS2 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) AT5G20830 91 / 7e-19 ASUS1, ATSUS1, SUS1 sucrose synthase 1 (.1.2) AT3G43190 89 / 2e-18 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) AT5G37180 87 / 8e-18 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) AT4G02280 81 / 8e-16 ATSUS3, SUS3 sucrose synthase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016657 [exp] 917 / 0 AT1G04920 1670 / 0.0 sucrose phosphate synthase 3F (.1) Lus10008056 [exp] 518 / 1e-174 AT5G11110 1384 / 0.0 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1) Lus10038119 [exp] 516 / 9e-173 AT5G20280 1647 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Lus10041041 [exp] 459 / 2e-147 AT4G10120 1412 / 0.0 Sucrose-phosphate synthase family protein (.1.2) Lus10006184 [exp] 173 / 1e-51 AT4G10120 208 / 4e-63 Sucrose-phosphate synthase family protein (.1.2) Lus10006185 [exp] 112 / 3e-28 AT4G10120 189 / 2e-55 Sucrose-phosphate synthase family protein (.1.2) Lus10007372 [exp] 97 / 9e-21 AT1G73370 1195 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10041979 [exp] 95 / 3e-20 AT1G73370 1190 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10017984 [exp] 95 / 3e-20 AT1G73370 1117 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G057800 [exp] 786 / 0 AT1G04920 1610 / 0.0 sucrose phosphate synthase 3F (.1) Potri.001G317600 [exp] 778 / 0 AT1G04920 1644 / 0.0 sucrose phosphate synthase 3F (.1) Potri.T124307 [exp] 520 / 4e-175 AT5G20280 1389 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.018G124677 [exp] 520 / 9e-175 AT5G20280 1601 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.006G064300 [exp] 520 / 1e-174 AT5G20280 1625 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.018G025100 [exp] 507 / 1e-169 AT5G20280 1472 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.013G095500 [exp] 495 / 2e-165 AT4G10120 1513 / 0.0 Sucrose-phosphate synthase family protein (.1.2) Potri.004G081300 [exp] 93 / 1e-19 AT1G73370 1234 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.015G029100 [exp] 92 / 3e-19 AT1G73370 1289 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.012G037200 [exp] 91 / 4e-19 AT1G73370 1284 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1 CL0137 [flax] [poplar] HAD PF05116 [flax] [poplar] S6PP Sucrose-6F-phosphate phosphohydrolase
Representative CDS sequence Show only first row Show all	>Lus10022570 pacid=23166898 polypeptide=Lus10022570 locus=Lus10022570.g ID=Lus10022570.BGIv1.0 annot-version=v1.0 ATGCGATTTCTTACAAATCCCCACAAGCCAATGATTTTGGCTTTGTCTAGGCCTGATCCTAACAAGAATCTTACGACTCTTTTAAAAGCCTTAAGAGAAT GTCGTCCATTGAGAGAACTTGCGAATCTTGTTAACACTGGTAATGGGAACAGGGATGGCATAGATGAGATGTCTGGAGGAAATGCAAGCGTTCTAACCAC AGTTTTGAAGATGATTGATAAGGATGACCTCTATGGCCTAGCTGCCTACCCAAAGCATCACAAGCAATCAGATGTTCTAGAAATTTACCGGCTTACTGCA AAAACAAAGGGAGTGTTCATCAATCCGGCATTGGTTGAGCCTTTTGGTCTTACATTAATTGAGGCAGCAGCTCATGGTCTTCCAATGGTGGCTACCAAAA ATGGAGGACCAGTTGACATTAATCGGGCTCTGAACAATGGTCTACTGGTGGACCCTCATAACCAACACGCCATTGCTGATACATTATTGAAATTGGTGTC AGAGAAGAACTTATGGCATGGTTGTAGAAGGAATGGTTGGAAGAACATACACCTCTTCTCGTGGCCAGAACACTGCCACACATACTTGACAAGGGTAGCA GCGTGCAGGATGAGACACCCGCAGTGGAAAACTGATACTCCTGGGGATGAGTTGCCAGCTGAAGAGTCATCTCTTAATGATTCCCTAATGGATGTCCAAG ATATGTCTCTGAGGCTCTCCATCGATGGAGTCAACGGATCTGTCGATTACTTGGGTGTAGGTGGCGGTGACCTTCAAGATCAAGTGAAAAATGTTATGAG CAGGATGAGGAAGCCAGAAGTTTCAATGAAAGAGAATGAATCTGGGAAGCCTGAGGGAGAACCTGAAGGCAAGATGATTAAGATTCTTCAGGATATAATC AAGGCCATTCGCATGGACTCGTTATTTTCAAGAGTATCAGGAATAGCCATATCAACTGCCATGTCATTGTCTGAAACTCAGAGCTTCCTAAAATCAGCAA AGCTTCAAGCAACAGAGTTCGATGCGCTGATTTGCAGTAGTGGGAGTGAATTGTATTATCCTGGTACTTATGCTGAAGGAGATGGTAAGCTTTATCCCGA TCCTGACTATGCCACACATATAGACTACCGATGGGGTTGTGAAGGTCTAAAAAATACTATATGGAAGCTTGTGAGATCAACCGAAGGTGACACTATTCAA TCCAAAAGTAGGCAGTCAAGCCCCATCCAGGAAGATGATAAACTGAGCACATATCATTGCATCACTTACACGATCAAGGACCCCAGTCGAGTAATGAGAG TGCAGGACCTGATGCAGAAGTTGAGGATGCGAGGTCTTCGTTGCCATCCAATGTACTGCAGAGCCTCAACGCGAATGCAAATCATTCATTTGCTTGCTTC GAGAGCACAAGCACTCAGATATATGTTTGTGAGGTGGAGACTGAATATTGGGAACATGTTTGTGATACTTGGGGAAACTGGAGACACTGATTACCAAGAA ATGATATCAGGAGCTCATAAGACTATAGTAATGAAGAACGTGGTGAAGAAAGGGTAG
AA sequence Show only first row Show all	>Lus10022570 pacid=23166898 polypeptide=Lus10022570 locus=Lus10022570.g ID=Lus10022570.BGIv1.0 annot-version=v1.0 MRFLTNPHKPMILALSRPDPNKNLTTLLKALRECRPLRELANLVNTGNGNRDGIDEMSGGNASVLTTVLKMIDKDDLYGLAAYPKHHKQSDVLEIYRLTA KTKGVFINPALVEPFGLTLIEAAAHGLPMVATKNGGPVDINRALNNGLLVDPHNQHAIADTLLKLVSEKNLWHGCRRNGWKNIHLFSWPEHCHTYLTRVA ACRMRHPQWKTDTPGDELPAEESSLNDSLMDVQDMSLRLSIDGVNGSVDYLGVGGGDLQDQVKNVMSRMRKPEVSMKENESGKPEGEPEGKMIKILQDII KAIRMDSLFSRVSGIAISTAMSLSETQSFLKSAKLQATEFDALICSSGSELYYPGTYAEGDGKLYPDPDYATHIDYRWGCEGLKNTIWKLVRSTEGDTIQ SKSRQSSPIQEDDKLSTYHCITYTIKDPSRVMRVQDLMQKLRMRGLRCHPMYCRASTRMQIIHLLASRAQALRYMFVRWRLNIGNMFVILGETGDTDYQE MISGAHKTIVMKNVVKKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04920		ATSPS3F	sucrose phosphate synthase 3F ...		Lus10022570 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Lus10010221 [exp]	10.0	0.8146
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10024162 [exp]	11.6	0.8060
AT3G44670			Disease resistance protein (TI...		Lus10008525 [exp]	13.6	0.7918
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10021854 [exp]	16.1	0.8098
AT3G24530			AAA-type ATPase family protein...		Lus10005293 [exp]	21.8	0.7926
AT1G05020			ENTH/ANTH/VHS superfamily prot...		Lus10029998 [exp]	24.5	0.7650
AT1G13570			F-box/RNI-like superfamily pro...		Lus10034414 [exp]	24.5	0.7741
AT5G39960			GTP binding;GTP binding (.1)		Lus10033794 [exp]	25.7	0.7670
AT3G29760			Haloacid dehalogenase-like hyd...		Lus10027135 [exp]	29.8	0.7908
AT5G65550			UDP-Glycosyltransferase superf...		Lus10028863 [exp]	33.5	0.7853

Compare expression of checked genes

Lus10022570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.