Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13750 96 / 7e-22 EMB2597, NOV NO VEIN, EMBRYO DEFECTIVE 2597, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT1G08300 76 / 5e-15 NVL no vein-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037831 [exp] 480 / 3e-171 AT4G13750 149 / 7e-39 NO VEIN, EMBRYO DEFECTIVE 2597, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10016661 [exp] 519 / 8e-169 AT4G13750 2109 / 0.0 NO VEIN, EMBRYO DEFECTIVE 2597, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10017105 [exp] 348 / 4e-116 AT1G04910 767 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G317200 [exp] 140 / 5e-37 AT4G13750 2097 / 0.0 NO VEIN, EMBRYO DEFECTIVE 2597, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022572 pacid=23166920 polypeptide=Lus10022572 locus=Lus10022572.g ID=Lus10022572.BGIv1.0 annot-version=v1.0 ATGGCTGAATCTGGCTCCACAGTGGATCAAACAAAGTTCTTCATCCTGAACTGCCAGAAGATACCAAAGTTGCCAGAGGAAGAAGTTATGTGGTCTCTCT ACCCTCCACCTTCAAGTGAAAACTGTGAATTCCTGCAAACAGATATTGTTTCTATGGCAACGGATGAGGAGATGCTTATAAAATCGAACACAGTCTCTTC AACTGTAGAAAATGGGTCCAAATCATTGAAGTACCAGATGAAAGCTGGGTTCAGATCGAATTGGCCTCCTGCCGATTGGAAAACAGCGCCTGGTTATGGT CCTCATGCAGCAGGTTACAGCAGAAGGAAAACGCTGAGCATTGAGAAGGATGCTGACATGACACTGGCAGAACGAGAGGTAGGTATCATTGGCAATGGCG ACTGGACCATCAGAGATGATCCAGAGACATCAACTTCTCTGGGCTGTGAACCTGTGAATGACCATCTCAGTCTTGTGTATAATCAAACGGGTGGCGTAGA TGGGACAGTTGATCCCACACACTATGAGGTAATTCCAGATCAAGCTCAGTGGCTCTCGTTGGGATTTGGCAGGAGAGATCGATTTGCTATAACTGGTGGT TCCAGTGATCAAGCGATAGAAACAGGAAGATCGGGAGAGCAGATTGCTTTCAGATACTTGATGGGGAAATACGGAAAAGAAGCAGTGAGGTGGGTTAATG AAGCACAGGAGACTGGGTTACCTTATGACATGCTGGTGAAAGAGCATGAGCATGGAAATCACAATGCGATGATCACTTTATTCAAGAACCCAGTGAACCA GTGCCAGCAAGGAAAGCTGCGTTTGGTGGCTGTGATGCCAACCCAGCAGAGTGGAGGTGAGCTTTTCCCACTGCTAGATGATGCTTGA
AA sequence Show only first row Show all	>Lus10022572 pacid=23166920 polypeptide=Lus10022572 locus=Lus10022572.g ID=Lus10022572.BGIv1.0 annot-version=v1.0 MAESGSTVDQTKFFILNCQKIPKLPEEEVMWSLYPPPSSENCEFLQTDIVSMATDEEMLIKSNTVSSTVENGSKSLKYQMKAGFRSNWPPADWKTAPGYG PHAAGYSRRKTLSIEKDADMTLAEREVGIIGNGDWTIRDDPETSTSLGCEPVNDHLSLVYNQTGGVDGTVDPTHYEVIPDQAQWLSLGFGRRDRFAITGG SSDQAIETGRSGEQIAFRYLMGKYGKEAVRWVNEAQETGLPYDMLVKEHEHGNHNAMITLFKNPVNQCQQGKLRLVAVMPTQQSGGELFPLLDDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Lus10022572 [exp]	0	1
AT3G48010		ATCNGC16	cyclic nucleotide-gated channe...		Lus10042132 [exp]	1.0	0.9052
AT5G15070			Phosphoglycerate mutase-like f...		Lus10005263 [exp]	2.6	0.8866
					Lus10018970 [exp]	3.0	0.9016
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10020736 [exp]	3.5	0.9036
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10009489 [exp]	6.0	0.8989
AT5G65550			UDP-Glycosyltransferase superf...		Lus10028863 [exp]	6.7	0.8916
AT1G48320			Thioesterase superfamily prote...		Lus10036869 [exp]	8.1	0.8802
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10025216 [exp]	8.2	0.8674
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Lus10035109 [exp]	8.8	0.8705
AT5G65550			UDP-Glycosyltransferase superf...		Lus10028864 [exp]	8.9	0.8816

Compare expression of checked genes

Lus10022572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.