Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033051 [exp] 132 / 2e-38 ND / Lus10024749 [exp] 131 / 2e-38 ND / Lus10003831 [exp] 128 / 6e-36 ND / Lus10006395 [exp] 122 / 6e-35 ND / Lus10027052 [exp] 108 / 6e-31 ND / Lus10004816 [exp] 110 / 6e-29 AT5G01470 342 / 6e-118 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10032910 [exp] 106 / 2e-28 ND / Lus10002987 [exp] 102 / 5e-28 ND / Lus10015895 [exp] 102 / 9e-28 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022574 pacid=23166897 polypeptide=Lus10022574 locus=Lus10022574.g ID=Lus10022574.BGIv1.0 annot-version=v1.0 ATGGGCCATCCTCGTCGCCCAGGCCCAGAAGTCCCTCGTCGTCTCTCATCACCTCGGTCTTCATCGTCTCCCCGGTGGGTCCTCCCTCGTCGCCTCGGTC ATCCTCGTCGGCCCCGCCCAGAAGTCCACTGGTCCACTGGTCCTTGTCGTTCGTCGAATAGTCGTCAGTCATCATCCCATCAGTCATCAGAACAAGAACT AAAAGTTCCAGGACTCGAAAATCAGATTCATAGAGTTCATGCCGGTGACGGAATTGATTACACCAACTGGTTCTTATCATACGATACTTACGATATTGTC GCTAAAGCGTGCGCAACTCCAAAGCAGATTGCGACGACTCTTAATTTTCATCTGATTAATGGGTCCAACAAAAGGAATGACACAGAATGGGAGTGTCGGA TGTATATGTATTGCGCCTATGGACCTAGTTGTAAGACTTTTGGTTCTGATTCGCCAAAACGGACAACAAAGTCAAAGAAGTGTAATTGCCCATTCCGAGT TGTCGTGCGGTCAATGGTGGTAGAACGTGAGTCGAAGTTTTTTATTGACAGAGTTAGAGACAAAAATAATCTTGAAAATTAA
AA sequence Show only first row Show all	>Lus10022574 pacid=23166897 polypeptide=Lus10022574 locus=Lus10022574.g ID=Lus10022574.BGIv1.0 annot-version=v1.0 MGHPRRPGPEVPRRLSSPRSSSSPRWVLPRRLGHPRRPRPEVHWSTGPCRSSNSRQSSSHQSSEQELKVPGLENQIHRVHAGDGIDYTNWFLSYDTYDIV AKACATPKQIATTLNFHLINGSNKRNDTEWECRMYMYCAYGPSCKTFGSDSPKRTTKSKKCNCPFRVVVRSMVVERESKFFIDRVRDKNNLEN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022574 [exp]	0	1
					Lus10015577 [exp]	1.4	0.8198
AT4G20050		QRT3	QUARTET 3, Pectin lyase-like s...		Lus10036231 [exp]	2.0	0.7826
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Lus10027223 [exp]	2.6	0.8318
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10033519 [exp]	3.5	0.8064
AT4G33355			Bifunctional inhibitor/lipid-t...		Lus10029445 [exp]	4.1	0.7087
AT5G15010			Tetratricopeptide repeat (TPR)...		Lus10042530 [exp]	11.4	0.6991
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10003865 [exp]	11.5	0.7257
AT1G30825		DIS2, ARPC2, AR...	DISTORTED TRICHOMES 2, ACTIN-R...		Lus10002867 [exp]	12.6	0.7820
AT1G73050			Glucose-methanol-choline (GMC)...		Lus10034845 [exp]	12.8	0.6234
AT3G53010			Domain of unknown function (DU...		Lus10042635 [exp]	19.5	0.7070

Compare expression of checked genes

Lus10022574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.