Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32760 109 / 3e-29 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016662 [exp] 226 / 3e-74 AT2G32760 388 / 1e-134 unknown protein Lus10022576 [exp] 220 / 4e-72 AT2G32760 384 / 4e-133 unknown protein Lus10037826 [exp] 100 / 7e-27 AT2G32760 172 / 2e-53 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G056800 [exp] 139 / 2e-40 AT2G32760 368 / 5e-127 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022575 pacid=23166942 polypeptide=Lus10022575 locus=Lus10022575.g ID=Lus10022575.BGIv1.0 annot-version=v1.0 ATGGAACGTGGCCACAGTCTCTCGTCAGAGCCAACGACGGGGAAGAAAAGTAGCGTCAAATCGGTGAGTGTGAAATTGATCGAATGGGAGGATTACGAGC AGGAAGTAGCACGATTGTGGAGCCTTTCCTCTGCTCTGAAGGAAGCTAGGGAGAGAAAGGAAGCTCTTCAGGGAAAGATTCATTCACTCATTCAGGTTGA AGCTGAGTCGTTAAGTAGATTGAATGTACTTGAAGAGAGTCGGGAGAGGGTTGAAGCTAGAAAGAAGGTTATGGAGAGTTTGTCAGTACGGTCACAGGGA GCAGCAGAGAAACCTAAGAAGGAAGAAGCAAGGCTTGGTGCAGAAGTCAGATCCCTTTTGGTTGCAGGAACTGCTCTTTCTGCGGCTAATAAGCAACTGA AGTTAATTTTTGAAGAATACTTAAGTAGACGCGGATGCCTAAGGGGAATTTAA
AA sequence Show only first row Show all	>Lus10022575 pacid=23166942 polypeptide=Lus10022575 locus=Lus10022575.g ID=Lus10022575.BGIv1.0 annot-version=v1.0 MERGHSLSSEPTTGKKSSVKSVSVKLIEWEDYEQEVARLWSLSSALKEARERKEALQGKIHSLIQVEAESLSRLNVLEESRERVEARKKVMESLSVRSQG AAEKPKKEEARLGAEVRSLLVAGTALSAANKQLKLIFEEYLSRRGCLRGI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32760			unknown protein		Lus10022575 [exp]	0	1
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10014863 [exp]	4.4	0.8164
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Lus10010842 [exp]	6.0	0.8149
AT1G72890			Disease resistance protein (TI...		Lus10009384 [exp]	9.2	0.7891
					Lus10017219 [exp]	10.1	0.8124
AT2G39260			binding;RNA binding (.1)		Lus10030801 [exp]	13.1	0.8053
AT1G26930			Galactose oxidase/kelch repeat...		Lus10024239 [exp]	15.5	0.7935
AT1G48360			zinc ion binding;nucleic acid ...		Lus10037442 [exp]	15.9	0.7479
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10019213 [exp]	16.7	0.7792
AT4G19890			Pentatricopeptide repeat (PPR-...		Lus10006083 [exp]	17.2	0.5924
AT3G07500	FAR1_related		Far-red impaired responsive (F...		Lus10026732 [exp]	18.2	0.7481

Compare expression of checked genes

Lus10022575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.