Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32760 353 / 5e-121 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016662 [exp] 587 / 0 AT2G32760 388 / 1e-134 unknown protein Lus10022575 [exp] 220 / 1e-71 AT2G32760 111 / 5e-30 unknown protein Lus10037826 [exp] 205 / 3e-65 AT2G32760 172 / 2e-53 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G056800 [exp] 422 / 6e-148 AT2G32760 368 / 5e-127 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022576 pacid=23166921 polypeptide=Lus10022576 locus=Lus10022576.g ID=Lus10022576.BGIv1.0 annot-version=v1.0 ATGGAACGTGGCCACAGTCTCTCGTCAGAGCCAACGACGGGGAAGAAAAGTAGCGTCAAATCGGTGAGTGTGAAATTGATCGAATGGGAGGATTACGAGC AGGAAGTAGCACGATTGTGGAGCCTTTCCTCTGCTCTGAAGGAAGCTAGGGAGAGAAAGGAAGCTCTTCAGGGAAAGATTCATTCACTCATTCAGGTTGA AGCTGAGTCGTTAAGTAGATTGAATGTACTTGAAGAGATTCGGGAGAGGGTTGAATCTAGAAAGAAGGTTATGGGGAGTTTGTCAGTACGCTCACAGGGA GGAACAGAGAAACCTAAGAAGGAAGAAGCAAGGCTTGGTGCAGAAGTCAGATCCCTTTTGGTTGCAGGAACTGCTCTTTCTGCGGCTAATAATCAACTGG AGGAATCAAATACCCTGTTTGCTGGAGAAAGTGAGTTTCTACGCCTCAGAAATTTGCAGAAGATGCTAAGGTCGAGGCAGCAATTTATGATATCACAGGT TTCGTTGCTTTATTCTGTGAAAATGTCACAAGGACCTTCACATGACCAGGAACTTGAATCTCTCCCAAGCACTAGTAAATCAGGGAACTCTGGTGGGTCT AAGCTTCTTAATCCGGGATCCTTGACAATTTTAGGTCTGCATTTGACTATGCTTCCTTTTACAAAGATGAGCTTTTTCTCCAATAAGAAGGAGGTCCAGA GGTCTGCAACAGCCCTAGGATATGTTGCTCATGCTGTTTCACTAGTATCCTCATACTTGAACGTTCCCATCCGTTACCCTCTCCGGCTGGGTGGCTCTCA TTCTTACATCATTGATCCAGCACCATCGACGGAGGCTACAACGTTGACATCAGGGTCTTCAAGTACAACATCTCTCAGAAATGCGAAGCCAGTTGAATTC CCTCTTTTCTTAGATGGTCAAGATACAACAAGAGCAGCTTATGCTGTATTCCTATTGAACAAGGATTTGGAGCAGCTGTTGAATTACATCGGAGTGAAAA GTCTGGGGCCACGTCATGTATTGGCTAATATGAAGGAGCTTGTGAGGACAGTTCAGTCTGCAGATTTTCTAGAATGGTGA
AA sequence Show only first row Show all	>Lus10022576 pacid=23166921 polypeptide=Lus10022576 locus=Lus10022576.g ID=Lus10022576.BGIv1.0 annot-version=v1.0 MERGHSLSSEPTTGKKSSVKSVSVKLIEWEDYEQEVARLWSLSSALKEARERKEALQGKIHSLIQVEAESLSRLNVLEEIRERVESRKKVMGSLSVRSQG GTEKPKKEEARLGAEVRSLLVAGTALSAANNQLEESNTLFAGESEFLRLRNLQKMLRSRQQFMISQVSLLYSVKMSQGPSHDQELESLPSTSKSGNSGGS KLLNPGSLTILGLHLTMLPFTKMSFFSNKKEVQRSATALGYVAHAVSLVSSYLNVPIRYPLRLGGSHSYIIDPAPSTEATTLTSGSSSTTSLRNAKPVEF PLFLDGQDTTRAAYAVFLLNKDLEQLLNYIGVKSLGPRHVLANMKELVRTVQSADFLEW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32760			unknown protein		Lus10022576 [exp]	0	1
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10028312 [exp]	3.2	0.8233
AT3G05940			Protein of unknown function (D...		Lus10001058 [exp]	7.6	0.8352
AT4G35987			S-adenosyl-L-methionine-depend...		Lus10028446 [exp]	8.9	0.8091
AT3G09850			D111/G-patch domain-containing...		Lus10019584 [exp]	9.3	0.8092
AT3G14400		UBP25	ubiquitin-specific protease 25...		Lus10005591 [exp]	32.2	0.7877
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10015179 [exp]	35.5	0.8037
AT5G24670		TAD3, EMB2820	tRNA adenosine deaminase 3, EM...		Lus10016480 [exp]	41.0	0.7610
AT4G23660		ATPPT1	polyprenyltransferase 1 (.1.2....		Lus10033224 [exp]	41.7	0.7886
AT5G05310			TLC ATP/ADP transporter (.1.2....		Lus10012891 [exp]	47.7	0.7843
AT3G07570			Cytochrome b561/ferric reducta...		Lus10012305 [exp]	49.6	0.7553

Compare expression of checked genes

Lus10022576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.