Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60660 248 / 3e-83 PIP2F, PIP2;4 plasma membrane intrinsic protein 2;4 (.1) AT4G35100 245 / 3e-82 SIMIP, PIP3A, PIP2;7, PIP3 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) AT2G39010 240 / 5e-80 PIP2E, PIP2;6 PLASMA MEMBRANE INTRINSIC PROTEIN 2;6, plasma membrane intrinsic protein 2E (.1) AT2G16850 239 / 7e-80 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) AT2G37170 239 / 9e-80 PIP2;2, PIP2B PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) AT3G53420 239 / 1e-79 PIP2;1, PIP2A PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) AT2G37180 234 / 6e-78 PIP2C, PIP2;3, RD28 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) AT3G54820 234 / 9e-78 PIP2D, PIP2;5 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) AT1G01620 216 / 2e-71 TMP-B, PIP1C, PIP1;3 PLASMA MEMBRANE INTRINSIC PROTEIN 1;3, plasma membrane intrinsic protein 1C (.1.2) AT4G23400 215 / 2e-70 PIP1D, PIP1;5 plasma membrane intrinsic protein 1;5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021475 [exp] 355 / 7e-126 AT2G39010 265 / 4e-89 PLASMA MEMBRANE INTRINSIC PROTEIN 2;6, plasma membrane intrinsic protein 2E (.1) Lus10015083 [exp] 261 / 6e-90 AT5G60660 290 / 2e-100 plasma membrane intrinsic protein 2;4 (.1) Lus10026504 [exp] 260 / 3e-89 AT5G60660 358 / 1e-126 plasma membrane intrinsic protein 2;4 (.1) Lus10019934 [exp] 259 / 2e-87 AT2G37170 474 / 6e-171 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10023184 [exp] 254 / 2e-85 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10039222 [exp] 239 / 8e-80 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10027467 [exp] 239 / 1e-79 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10014978 [exp] 238 / 2e-79 AT2G16850 514 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10023515 [exp] 231 / 2e-76 AT3G54820 482 / 5e-174 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G128200 [exp] 258 / 4e-87 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.006G128000 [exp] 257 / 1e-86 AT2G37170 487 / 5e-176 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.009G013900 [exp] 255 / 4e-86 AT2G37170 458 / 8e-165 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.008G039600 [exp] 245 / 5e-82 AT3G53420 445 / 1e-159 PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) Potri.010G222700 [exp] 244 / 1e-81 AT3G54820 484 / 6e-175 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Potri.004G176300 [exp] 242 / 6e-81 AT4G35100 513 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) Potri.016G089500 [exp] 231 / 2e-76 AT2G37180 458 / 1e-164 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) Potri.009G136600 [exp] 230 / 3e-76 AT4G35100 493 / 1e-178 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) Potri.005G109300 [exp] 217 / 4e-71 AT2G16850 413 / 4e-147 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Potri.006G098100 [exp] 215 / 4e-70 AT4G00430 482 / 4e-174 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10022577 pacid=23178558 polypeptide=Lus10022577 locus=Lus10022577.g ID=Lus10022577.BGIv1.0 annot-version=v1.0 ATGGCAAAGGACGTGGAAGCCGCCGATAAACCAGCCGCCGAGTTCTCAGCCAAGGACTACCACGACCCACCGCCGGCACCCATCTTCGCTCTCGAAGAGC TCACCAAATGGTCCTTTTACAGAGCCCTCATCGCCGAGTTCATCGCCACCCTCCTCTTCCTCTACATCACCGTCCTCACCGTCATCGGCTACAAGTATGG TGGTGGAGCTAATGAGCTGGCTAGTGGGTATAATAAGGGAACCGGTCTGGGTGCTGAGATTATCGGAACGTTCGTTTTGGTTTATACCGTTTTCTCGGCT ACTGACCCCAAGAGGAGCGCCAGAGACTCCCATGTTCCTGTATTGGCACCACTTCCAATTGGGTTTGCAGTGTTCATGGTGCACTTGGCAACAATCCCAA TAACTGGGACTGGAATCAACCCTGCTAGGAGTTTTGGTGCTGCTGTTATCTACAACCAAGACAAGGCTTGGGATGATCAGTGGATATTTTGGGTGGGGCC GTTCATTGGAGCTGCAATAGCTGCTTTGTACCACCAATACATCCTAAGAGCAGCAGCAATCAAGGCATTGGGTTCATTCAGGAGCAATGCTTGA
AA sequence Show only first row Show all	>Lus10022577 pacid=23178558 polypeptide=Lus10022577 locus=Lus10022577.g ID=Lus10022577.BGIv1.0 annot-version=v1.0 MAKDVEAADKPAAEFSAKDYHDPPPAPIFALEELTKWSFYRALIAEFIATLLFLYITVLTVIGYKYGGGANELASGYNKGTGLGAEIIGTFVLVYTVFSA TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNQDKAWDDQWIFWVGPFIGAAIAALYHQYILRAAAIKALGSFRSNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Lus10022577 [exp]	0	1
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10039775 [exp]	1.0	0.8787
AT3G10120			unknown protein		Lus10021358 [exp]	2.4	0.8472
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10018549 [exp]	8.1	0.7938
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10033981 [exp]	8.8	0.8340
AT5G58320			Kinase interacting (KIP1-like)...		Lus10034448 [exp]	10.8	0.7889
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10038689 [exp]	12.5	0.8000
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10000985 [exp]	13.4	0.8431
AT5G50090			unknown protein		Lus10034124 [exp]	15.3	0.8293
AT5G65660			hydroxyproline-rich glycoprote...		Lus10042927 [exp]	16.6	0.8178
AT3G23090			TPX2 (targeting protein for Xk...		Lus10021223 [exp]	18.6	0.8147

Compare expression of checked genes

Lus10022577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.