Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60520 308 / 7e-105 Late embryogenesis abundant (LEA) protein-related (.1) AT5G60530 292 / 4e-97 late embryogenesis abundant protein-related / LEA protein-related (.1) AT4G27400 189 / 4e-58 Late embryogenesis abundant (LEA) protein-related (.1) AT5G54370 187 / 1e-57 Late embryogenesis abundant (LEA) protein-related (.1) AT1G54890 182 / 3e-55 Late embryogenesis abundant (LEA) protein-related (.1) AT3G19430 141 / 4e-38 late embryogenesis abundant protein-related / LEA protein-related (.1) AT2G19000 42 / 7e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036107 [exp] 463 / 2e-165 AT5G60520 437 / 1e-154 Late embryogenesis abundant (LEA) protein-related (.1) Lus10015148 [exp] 285 / 1e-94 AT5G60520 428 / 2e-150 Late embryogenesis abundant (LEA) protein-related (.1) Lus10031532 [exp] 280 / 2e-94 AT5G60520 426 / 4e-151 Late embryogenesis abundant (LEA) protein-related (.1) Lus10015149 [exp] 281 / 2e-93 AT5G60520 429 / 1e-150 Late embryogenesis abundant (LEA) protein-related (.1) Lus10031297 [exp] 209 / 2e-65 AT5G54370 356 / 2e-122 Late embryogenesis abundant (LEA) protein-related (.1) Lus10033540 [exp] 181 / 4e-55 AT5G54370 396 / 2e-138 Late embryogenesis abundant (LEA) protein-related (.1) Lus10017577 [exp] 176 / 6e-53 AT5G54370 389 / 2e-135 Late embryogenesis abundant (LEA) protein-related (.1) Lus10038588 [exp] 169 / 3e-50 AT5G54370 481 / 6e-172 Late embryogenesis abundant (LEA) protein-related (.1) Lus10020169 [exp] 169 / 1e-49 AT5G54370 479 / 5e-170 Late embryogenesis abundant (LEA) protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G012500 [exp] 341 / 1e-117 AT5G60520 459 / 3e-163 Late embryogenesis abundant (LEA) protein-related (.1) Potri.009G012600 [exp] 323 / 5e-110 AT5G60520 481 / 2e-171 Late embryogenesis abundant (LEA) protein-related (.1) Potri.012G145400 [exp] 245 / 2e-79 AT5G54370 388 / 1e-134 Late embryogenesis abundant (LEA) protein-related (.1) Potri.011G127900 [exp] 190 / 2e-58 AT5G54370 429 / 1e-151 Late embryogenesis abundant (LEA) protein-related (.1) Potri.009G097400 [exp] 148 / 3e-40 AT3G19430 402 / 5e-131 late embryogenesis abundant protein-related / LEA protein-related (.1) Potri.009G145700 [exp] 142 / 4e-39 AT3G19430 379 / 4e-126 late embryogenesis abundant protein-related / LEA protein-related (.1) Potri.001G405650 [exp] 118 / 4e-31 AT5G54370 350 / 7e-121 Late embryogenesis abundant (LEA) protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06830 [flax] [poplar] Root_cap Root cap
Representative CDS sequence Show only first row Show all	>Lus10022578 pacid=23178667 polypeptide=Lus10022578 locus=Lus10022578.g ID=Lus10022578.BGIv1.0 annot-version=v1.0 ATGTTAAAATGGTGTTGTACCAACTACCATGATCAGCATGCACTAAATGGTCACGAACAAGTTTATTGTTTAGCAAAAGGAAACTGCCGAGGCAAAACCT TCACTTGCCCAGATCAATGCATCGAAAGGAAGCCTAAGCACAACAGGAAGAACAAGGGTTGCTTCATTGACTGCAGCAGCAAATGTGAAGTTACTTGCAA ATATAGACAGCCAAACTGCAATGGCTACGGCTGCCTTTGCTACGATCCGCGGTTCGTAGGAGGGGCTGTAACCAAGTGGAAGGACCAGAGATGGGTCCAG GCTCTGGCTATCATGTTCGACTCCCACACATTGGTCATTGCCGCCAAGAAAATCCCACACTGGGACGACAAGTTGGACGCTCTCATCGTCAAGTGGGACG GAGAGACCGTCACCATCCCAACCGGAGGTGATTCTGAGTGGAGATCTTCTACAGACAGCGTTGTTGTAGAAAGAACTTACGATGTCAACACTGTCAAGGT GACGGTTAAACACATGGGGGAGCTGTCCATAAGGATCAGGCCAATTGGAGAGGAAGAGAACAGAGATCGTAACTATCAACTTCCAGAGGGAGATGCGTTT GCTCATCTGGAGACGCAGTTCAAGTTCTACAATCTGACGGACGATGTGGAAGGAGTTTTAGGGAAGACTTACAGGCCGGATTATTCGAGTCCGGTGAAAG TTGGAGTGCCAATGCCGAGGTGGGGGGGGGGGGGGGGTGAAGACAAGTATGAGACTCCATCACTCTACTCAACTTTCTGCAGGCTTTGCAAGTTCCAGAG AGCTGGCCGCAAGCTTGCAGCTGCTTCTGTTTCTGGAGGAGTACTGTCTGAATAG
AA sequence Show only first row Show all	>Lus10022578 pacid=23178667 polypeptide=Lus10022578 locus=Lus10022578.g ID=Lus10022578.BGIv1.0 annot-version=v1.0 MLKWCCTNYHDQHALNGHEQVYCLAKGNCRGKTFTCPDQCIERKPKHNRKNKGCFIDCSSKCEVTCKYRQPNCNGYGCLCYDPRFVGGAVTKWKDQRWVQ ALAIMFDSHTLVIAAKKIPHWDDKLDALIVKWDGETVTIPTGGDSEWRSSTDSVVVERTYDVNTVKVTVKHMGELSIRIRPIGEEENRDRNYQLPEGDAF AHLETQFKFYNLTDDVEGVLGKTYRPDYSSPVKVGVPMPRWGGGGGEDKYETPSLYSTFCRLCKFQRAGRKLAAASVSGGVLSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60520			Late embryogenesis abundant (L...		Lus10022578 [exp]	0	1
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031265 [exp]	2.6	0.9617
AT1G70500			Pectin lyase-like superfamily ...		Lus10030888 [exp]	7.3	0.9595
AT1G23460			Pectin lyase-like superfamily ...		Lus10030602 [exp]	9.6	0.9574
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10037381 [exp]	10.7	0.9582
AT1G76250			unknown protein		Lus10012274 [exp]	11.4	0.9563
AT3G49070			Protein of unknown function (D...		Lus10039258 [exp]	12.0	0.9543
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Lus10041338 [exp]	14.7	0.9533
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Lus10021164 [exp]	16.3	0.9362
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10013932 [exp]	16.4	0.9475
AT5G12950			Putative glycosyl hydrolase of...		Lus10031258 [exp]	18.5	0.9154

Compare expression of checked genes

Lus10022578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.