Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60640 707 / 0 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT3G54960 636 / 0 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT3G16110 273 / 2e-84 ATPDI4, ATPDIL1-6 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) AT1G52260 268 / 1e-82 ATPDI3, ATPDIL1-5 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) AT1G21750 232 / 2e-69 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT1G77510 226 / 6e-67 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT2G47470 95 / 1e-21 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT1G04980 75 / 4e-14 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT1G35620 71 / 5e-13 ATPDI8, ATPDIL5-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) AT2G32920 70 / 1e-12 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021478 [exp] 950 / 0 AT5G60640 740 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10037403 [exp] 816 / 0 AT5G60640 729 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10041307 [exp] 397 / 1e-131 AT5G60640 536 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10035870 [exp] 262 / 3e-80 AT1G52260 632 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) Lus10025792 [exp] 252 / 1e-77 AT3G16110 553 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) Lus10018156 [exp] 215 / 8e-63 AT1G21750 710 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10029681 [exp] 204 / 2e-58 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10042721 [exp] 199 / 2e-55 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10025679 [exp] 122 / 4e-30 AT1G21750 482 / 8e-169 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G013600 [exp] 777 / 0 AT5G60640 712 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Potri.001G183500 [exp] 272 / 3e-84 AT3G16110 650 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) Potri.008G040100 [exp] 257 / 2e-79 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.010G222100 [exp] 246 / 2e-75 AT3G54960 275 / 2e-87 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.002G082100 [exp] 224 / 2e-66 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.005G179000 [exp] 214 / 1e-62 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.014G122800 [exp] 100 / 9e-23 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.002G198300 [exp] 94 / 1e-20 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.019G082400 [exp] 83 / 8e-17 AT1G35620 549 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.014G160000 [exp] 74 / 6e-14 AT1G04980 617 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10022581 pacid=23178618 polypeptide=Lus10022581 locus=Lus10022581.g ID=Lus10022581.BGIv1.0 annot-version=v1.0 ATGGCGACGACTCGATATCTCCTACTCCTAGCTCTCATCGCCTTCCTCCTCGTCTCCCCTTCCCTATCCAAACAACCCACTAACTCTCCGGATAACGACG ATGACGAGGACCTCAGCTTCCTTGAGGACGAGGTAGCTGATGCTGATCGCATTGGATCTTCTTCCCTCCACGATTCCGATCATTTCGACCACGATGACGA GGACGCCGACTTTGACAACGAAGGAGGGGAAGACTTCGATAACTTCTCGGACTTCGACGACTCCGATTCCGATCCTTTCAAGCAGCCCGAGGTCGACGAG AAGGACGTCGTGGTACTGAACGAAGGGAATTTCAGTGATTTCGTCAAGGAGCGTAAGTTCGTGCTGGTTGAGTTCTACGCCCCGTGGTGCGGTCACTGCC AAGCGCTCGCACCAGAGTACGCTGCCGCTGCGACGGAGCTGAAGGGAGATGACGTGGCGCTGGCTAAAGTGGATGCAGGTGAGGAGAGCGAGTTGTCTCA GCAGTATGATGTGCAAGGGTACCCCACTTTGGTTTTCTTCGTTGATGGGGTTCACAAGCCTTACCCTGGTCAGAGGACCAAAGATGCTATTGTTACGTGG ATTAAGAAGAAGATTGGACCTGGAATCTCCAACATTACCACATTGGATGATGCAGAGCGGATTTTGACTTCCGAGAGCAAAGTCGCCTTGGCTTACCTTA GCTCATTAGTGGGTTCTGAGAGTGACGAGCTTGCTGGTGCTTCAAGGATTGAAGACGATGTTAACTTCTATCAAACTGTTAACCCTGATGTCGCAAAGCT GTTCCATCTTGACCCTGAAGCTAGACGTCCTGCCTTGATCTTTATTAAAAAGGAGGCTGAGAAACTGAGTTATTTTGAGGGGAACTTCTCCAAGTCTGGT ATAGCCGAGTTCATATTCGCGAACAAGCTTCCACTGGTCACTATTTTCACCAGGGAAAATGCTCCAGCGGTCTTCGAGAGTCGGATAAAAAAGCAGCTCA TTTTGTTTGCTTCTAAAAATGACTCTGAGAGAGTTCTCTCACCGTTTGAAGAAGCTGCTAAAGCATTCAAGGGGAAGCTCATATGCGTATTTGTGGATAT GGAAAATGAAGATGTTGGAAAGCCTGTCTCTGAATATTTCGGCATCACAACTTCCCCCAAACTTATCGGTTATGCTGGAAATGAAGATGCTAAGAAATTC GTACTCGACAAGGAAGTTACCGTAGATAATATCAAGGCTTTTGGACAAGACTTCATTGAAGACAATCTGAAACCATTCTACAAGTCTGACCCAATTCCAG AAAATAATGATGGAGATGTCAAAATAGTGGTTGGAGACAACTTCGACGAAATCGTTTTGGACGAGTCGAAAGATGTTCTCCTTGAGATATATGCACCTTG GTGTGGACATTGCCAGTCTCTAGAGCCAACCTACAACAAGCTTGCTAAACATTTACGAGATATTGACTCCATTGTTGTAGCTAAGATGGATGGCACGACG AATGAACACCCCAGAGCCAAGTCTGATGGGTTCCCGACGCTTCTGTTCTTCCCTGCCGGGAACAAGAGCTTCGATCCAATCACTGTAGACACAGACAGAA CCGTGATAGCATTTTACAAGTTCATCAAGAAGCATGCTTCCATCCCATTCAAGCTTCAAAAGCCGGCTCAAACGACAAATTCTCCAGCACCCGAAACTAA GAGCCCCGACGCTAAGGATGAATTGTGA
AA sequence Show only first row Show all	>Lus10022581 pacid=23178618 polypeptide=Lus10022581 locus=Lus10022581.g ID=Lus10022581.BGIv1.0 annot-version=v1.0 MATTRYLLLLALIAFLLVSPSLSKQPTNSPDNDDDEDLSFLEDEVADADRIGSSSLHDSDHFDHDDEDADFDNEGGEDFDNFSDFDDSDSDPFKQPEVDE KDVVVLNEGNFSDFVKERKFVLVEFYAPWCGHCQALAPEYAAAATELKGDDVALAKVDAGEESELSQQYDVQGYPTLVFFVDGVHKPYPGQRTKDAIVTW IKKKIGPGISNITTLDDAERILTSESKVALAYLSSLVGSESDELAGASRIEDDVNFYQTVNPDVAKLFHLDPEARRPALIFIKKEAEKLSYFEGNFSKSG IAEFIFANKLPLVTIFTRENAPAVFESRIKKQLILFASKNDSERVLSPFEEAAKAFKGKLICVFVDMENEDVGKPVSEYFGITTSPKLIGYAGNEDAKKF VLDKEVTVDNIKAFGQDFIEDNLKPFYKSDPIPENNDGDVKIVVGDNFDEIVLDESKDVLLEIYAPWCGHCQSLEPTYNKLAKHLRDIDSIVVAKMDGTT NEHPRAKSDGFPTLLFFPAGNKSFDPITVDTDRTVIAFYKFIKKHASIPFKLQKPAQTTNSPAPETKSPDAKDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10022581 [exp]	0	1
AT3G13730		CYP90D1	"cytochrome P450, family 90, s...		Lus10006152 [exp]	3.0	0.8979
AT1G61240			Protein of unknown function (D...		Lus10011228 [exp]	3.2	0.9028
AT3G18860			transducin family protein / WD...		Lus10011296 [exp]	4.0	0.8869
AT1G70770			Protein of unknown function DU...		Lus10003709 [exp]	6.4	0.9227
AT5G04700			Ankyrin repeat family protein ...		Lus10019887 [exp]	6.5	0.8844
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10021478 [exp]	7.1	0.9161
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Lus10014368 [exp]	13.9	0.8981
AT3G57890			Tubulin binding cofactor C dom...		Lus10021031 [exp]	17.3	0.8617
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10031696 [exp]	18.7	0.9093
AT1G51980			Insulinase (Peptidase family M...		Lus10038262 [exp]	20.6	0.9131

Compare expression of checked genes

Lus10022581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.