Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45230 61 / 3e-12 hydroxyproline-rich glycoprotein family protein (.1) AT5G60630 45 / 2e-06 unknown protein AT2G28440 44 / 7e-06 proline-rich family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021479 [exp] 95 / 3e-25 AT3G45230 64 / 5e-13 hydroxyproline-rich glycoprotein family protein (.1) Lus10037404 [exp] 61 / 6e-12 AT3G45230 62 / 2e-12 hydroxyproline-rich glycoprotein family protein (.1) Lus10041306 [exp] 39 / 0.0004 AT3G45230 59 / 3e-11 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G013500 [exp] 59 / 2e-11 AT3G45230 52 / 2e-08 hydroxyproline-rich glycoprotein family protein (.1) Potri.004G210300 [exp] 51 / 1e-08 AT3G45230 51 / 2e-08 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022582 pacid=23178640 polypeptide=Lus10022582 locus=Lus10022582.g ID=Lus10022582.BGIv1.0 annot-version=v1.0 ATGCCGACCAAGTGTTCGATGTTAGTGCTCCTACTTCTCCTCTTCATTTCACTCATTGGCACCGCCGCTCAGTCACCGAGTCCGTCTCCCGAATCATCAC CCTCTCCGTCGCCGGACTCTGGATCGCCGGCCTCTTCGCCGTCGCCTATGTTCGATTCACCGCCGGAGCCTACTCCTTCTTCTTCTGATCTGATGAGAAG TAGTCCTGCCTCTGCTCCAGCTCCGAGCAAGAGCGCGTATGCTGCGGATGTCTACGATCAGGTGGTGGTGAGCGATGACTCGACGGGGACGGGCGGTGGG AAGAAGGCTGGAATCGCTTTCGGGCTGGTGGCGGCGGTTTGCGTGGTGGGATTCGGCGGGATGATTTACCGAAAGAGGCAGGAGAATATCAGGCGGGCGC GTTACAGATACGTCGCCGAGACGGAACTGCTCGGAAGGAATACCGGACCTTAA
AA sequence Show only first row Show all	>Lus10022582 pacid=23178640 polypeptide=Lus10022582 locus=Lus10022582.g ID=Lus10022582.BGIv1.0 annot-version=v1.0 MPTKCSMLVLLLLLFISLIGTAAQSPSPSPESSPSPSPDSGSPASSPSPMFDSPPEPTPSSSDLMRSSPASAPAPSKSAYAADVYDQVVVSDDSTGTGGG KKAGIAFGLVAAVCVVGFGGMIYRKRQENIRRARYRYVAETELLGRNTGP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45230			hydroxyproline-rich glycoprote...		Lus10022582 [exp]	0	1
AT1G49230			RING/U-box superfamily protein...		Lus10005818 [exp]	1.0	0.9610
AT3G45230			hydroxyproline-rich glycoprote...		Lus10021479 [exp]	2.2	0.9215
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036114 [exp]	3.0	0.9448
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036112 [exp]	3.7	0.9451
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036113 [exp]	4.5	0.9437
AT1G64160			Disease resistance-responsive ...		Lus10017539 [exp]	4.7	0.8966
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10002985 [exp]	5.9	0.9110
AT1G28280			VQ motif-containing protein (....		Lus10041929 [exp]	6.9	0.9128
AT4G14580		CIPK4, SnRK3.3	SNF1-RELATED PROTEIN KINASE 3....		Lus10041173 [exp]	7.1	0.8717
AT1G34420			leucine-rich repeat transmembr...		Lus10006067 [exp]	7.2	0.8694

Compare expression of checked genes

Lus10022582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.