Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60600 1215 / 0 HDS, ISPG, CSB3, CLB4, GcpE CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041304 [exp] 1323 / 0 AT5G60600 1307 / 0.0 CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3) Lus10037407 [exp] 1320 / 0 AT5G60600 1316 / 0.0 CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3) Lus10021480 [exp] 1303 / 0 AT5G60600 1162 / 0.0 CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G210400 [exp] 1255 / 0 AT5G60600 1266 / 0.0 CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3) Potri.009G013400 [exp] 1252 / 0 AT5G60600 1272 / 0.0 CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04551 [flax] [poplar] GcpE GcpE protein
Representative CDS sequence Show only first row Show all	>Lus10022583 pacid=23178661 polypeptide=Lus10022583 locus=Lus10022583.g ID=Lus10022583.BGIv1.0 annot-version=v1.0 ATGGCGACTGGAGCTGTGCCAGCATCGTTTACTGCTCTAAAGACTAGGGACTCAAGCTTGGGGTATGCCAAGAACACGGATTTCGTCAGAATGAGGAGGA TCAAATCCGGGAGGAGAAAGGTCTCCGTCATTAAAAACTCTGCTGTTGAACTTGAACCTGCCTCCGATGGAAGCCCTTTGTTAGTTCCAAGGCAAAGGTA CTGCGAATCGATAAACAAGACTGTTAGGAGGAAAACGAGCACGGTTATGGTTGGAAATGTTCCTCTTGGAAGTGATCACCCTATTAGGATTCAGACTATG ACCACAACTGACACTAAGGATGTAGCTGCAACTGTTGAACAGGTGATGAGAATCGCCGATCATGGAGCTGATATCGTTAGGATTACAGTTCAAGGCAAGA GGGAAGCTGATGCATGTTTCGACATCAAGAACACTCTTATCCAGAAGAATTATACCATACCTCTTGTGGCAGATATTCACTTTGCACCACCTGTTGCATT GCGGGTAGCTGAATGCTTCGATAAGATCCGTGTCAACCCTGGAAACTTTGCTGATAGGCGTGCTCAGTTCGAGAAGCTCGAGTACACAGAAGAGGACTAT CAGAAAGAACTCGAGCATATTGAGCAGGTCTTTACTCCATTGGTGGAGAAATGTAAGAAATATGGGAGAGCAATCCGCATTGGAACAAACCATGGAAGTC TTTCAGACCGTATAATGAGCTACTATGGAGATTCCCCTCAGGGAATGGTGGAATCTGCATTTGAGTTTGCAAGGATTTGCAGAAAGTTGGACTTCCACAA TTTCGTCTTCTCCATGAAAGCAAGCAACCCGGTTATCATGGTCACAGCATACCGCCGGCTTGTTGCTGAAATGAACGCTCTGGGTTGGGATTACCCCTTG CATTTGGGTGTCACCGAAGCTGGTGAAGGTGAGGACGGAAGGATGAAGTCCGCTATCGGAATTGGAACTCTTCTCCAAGACGGTTTGGGCGACACAATCA GAGTTTCGCTTACAGAAGCACCAGACCAGGAGATAGATCCTTGCAGAAGGTTGGCCAACCTTGGCATGAAGGCTTCTGAACTTCAGCAAGGAGTGGAACC ATTCGAGGAAAAACACAGGCGCTACTTTGATTTCCAGCGTCGAACTGGTCAATTGCCGGTACAGAAGGAGGGTGAGGAGGTCGATTACAGAGGTGTCCTG CATCGTGATGGCTCTGTAATAATGTCAGTTACCTTAGACCAGTTGAAGGCACCGGAACTCCTTTACAAATCACTTGCAGCAAAGCTTGTTGTTGGAATGC CTTTCAAGGACCTGGCCACGGTCGACTCGATCTTAGTTAGGGAACTACCTCCCGTGGATGATACCAATGCTCGTCTAGCTCTGAAAAGGTTAATAGATGT TAGCATGGGCGTCATAACCCCATTGTCCGAGCAGCTGACGAAGCCATTGCCTAACGCTATGGTGCTGGTCAATCTTAAGGAGTTGTCCGCTGGTGCTTAC AAGCTTTTGTCTGAAGGCACTAGATTGGTTATATCTCTTCGTGGCGACGAGTCTTATGAGGAACTGGAAATCCTTAAGAACGTTGAAGCTACGATGATCC TCCACAATGTACCATATGGAGAAGACAAAGTCGGCAGGGTTCAAGCAGCTCGCAGATTATTTGAGTATTTACAAGGAAATGCTCTTGATTTCCCTGTGAT TCACCATATCCAGTTCCCATCTGGGGTTCACAGAGATGACTTGGTCATCCGTTCCGGAGCAAATGCAGGATCCCTTTTAGTCGATGGTCTAGGGGACGGT ATTCTCGTCGAAGCCATGGACCATGACTTTGATTTCCTAAGGAACACATCTTTCAACTTACTACAAGGTTGCAGAATGAGGAACACGAAAACGGAGTATG TATCATGCCCATCATGCGGAAGAACCTTGTTTGATCTTCAAGAAATAAGTGCAGAGATCCGTGAAAAGACATCGCATTTACCTGGCGTCTCGATTGCAAT CATGGGCTGCATTGTGAATGGACCTGGAGAGATGGCCGATGCCGATTTCGGATACGTTGGTGGAGCCCCTGGAAAGATTGACCTTTACGTTGGAAAGACT GTGGTGAGAAGAGGGATAGAGATGGCGCATGCCACCGACCAGTTGATCGAGCTGATCAAAGAACATGGGAGGTGGGTCGATCCTTCCAAGGAAGAGTGA
AA sequence Show only first row Show all	>Lus10022583 pacid=23178661 polypeptide=Lus10022583 locus=Lus10022583.g ID=Lus10022583.BGIv1.0 annot-version=v1.0 MATGAVPASFTALKTRDSSLGYAKNTDFVRMRRIKSGRRKVSVIKNSAVELEPASDGSPLLVPRQRYCESINKTVRRKTSTVMVGNVPLGSDHPIRIQTM TTTDTKDVAATVEQVMRIADHGADIVRITVQGKREADACFDIKNTLIQKNYTIPLVADIHFAPPVALRVAECFDKIRVNPGNFADRRAQFEKLEYTEEDY QKELEHIEQVFTPLVEKCKKYGRAIRIGTNHGSLSDRIMSYYGDSPQGMVESAFEFARICRKLDFHNFVFSMKASNPVIMVTAYRRLVAEMNALGWDYPL HLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEAPDQEIDPCRRLANLGMKASELQQGVEPFEEKHRRYFDFQRRTGQLPVQKEGEEVDYRGVL HRDGSVIMSVTLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILVRELPPVDDTNARLALKRLIDVSMGVITPLSEQLTKPLPNAMVLVNLKELSAGAY KLLSEGTRLVISLRGDESYEELEILKNVEATMILHNVPYGEDKVGRVQAARRLFEYLQGNALDFPVIHHIQFPSGVHRDDLVIRSGANAGSLLVDGLGDG ILVEAMDHDFDFLRNTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKT VVRRGIEMAHATDQLIELIKEHGRWVDPSKEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10022583 [exp]	0	1
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10021480 [exp]	1.0	0.9873
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10019991 [exp]	1.7	0.9736
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10001210 [exp]	2.8	0.9758
AT2G26930		CMK, CMEK, ISPE...	PIGMENT DEFECTIVE 277, 4-\(cyt...		Lus10036098 [exp]	2.8	0.9732
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10006353 [exp]	3.0	0.9646
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10005362 [exp]	3.2	0.9722
					Lus10026081 [exp]	3.5	0.9669
AT4G39230			NmrA-like negative transcripti...		Lus10040442 [exp]	4.1	0.9573
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10012212 [exp]	4.9	0.9613
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10035258 [exp]	6.3	0.9646

Compare expression of checked genes

Lus10022583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.