Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14180 575 / 0 ATPRD1 putative recombination initiation defect 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021481 [exp] 1624 / 0 AT4G14180 904 / 0.0 putative recombination initiation defect 1 (.1) Lus10002928 [exp] 75 / 3e-16 ND / Lus10028824 [exp] 76 / 7e-14 AT5G04410 378 / 5e-125 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G232700 [exp] 786 / 0 AT4G14180 1021 / 0.0 putative recombination initiation defect 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022584 pacid=23178569 polypeptide=Lus10022584 locus=Lus10022584.g ID=Lus10022584.BGIv1.0 annot-version=v1.0 ATGAGGAGGCGGCGACGGATGTGGGGCTGCAGCGGTAAATGTGTGGCGGCGGCGGCTAGCAGCAGTCAGGGAATCTACGGAGGAGCGGTCCTAATGTGGA CAATCCCTATGCGCTGGTTAACGACAGATGATGAAATCCAAGGGGAGGTTCTCTTCGTCCTCTATAGACTATCCCTCCACGCTGGCGACGAAGAATCTGC TGGCCTTCTGTTAGCTTTCTCCTCAAAGTTCTGGCGATTTTCACTCGATGTCCTTCCGAAAACCCAGAATGACACTGTTCGCCTCAACTCTCTAGCACTT TTGACGGCTCTTGCTCAGAGAGGATACTTCGAAAATGAATACGGTAATGAGATCAACAGCATGGGTTCTGATGAAGCAGATAGCTTGATGCAAACGGCAG ATGAAAGATTAGATGCCCTTCCTTTGACTGTCTTGTTTTCTGAGGCTATCAAAGGTTCGCTACTTTCATCAGATAGGCAGATTCAAGCCAGTTCGCTAGA TCTCATCATGCACTATCTTACAAGGGACGGTGCACCAGGCAAAGAGGCACAACTATTGCTAGAAGAGAACATTGTAGACTATGTCTTCGAAATACTCTCA TTTACAGAACATACGGATCCTGTCACCAACTCTTGCCTGCTAGTCCTTCATCTTCTCTCTTCAGCTGAAATGGGCTTTATTGAAAGGCTTGTTGTTGGAT TCTCGACTCTAGTACCAGCGTTGTGCTATATAGCCAAAGTTCCTTTCCATCCAGTCCAGGAACATGCCTTGAAGCTGATTTGCAGTGGCATACCCAATTT TCCCGGAATATTATCATCTTCCCACGTTGAGGAGATATATCTTGCTCTAACTAAGATGTTCAAGAGCCATGCTGATGGAGACTTAGGCATGCCATTGCAG ACATTTGCGATTGTTTGTTCGCTTTTTTCAACCCTTTTGGGATGCTCGACTCTTCAGACTAATATGGTTATGACAGTTCAAGAAGCAATAAATTATGCCA TTCTAGCTTGTCTAAATACATCCCAGAAAGATCCTCGACAGCTCTTGCATGCCTTTGACTTGGTTAAAAAGGCATACAGCCAGAATTACCAAGTGGGATC CACAGATATAAGTGGTATTACAGACATAAGGAACTGCATCATTAACATATGTACGACACGTCTATTGCCCTGGATTGTTGCTGCCGCAGATGAAGTAGAC GAGGAAATTTTGCTCGGGACGCTAGAAACGTTTCACATTATACTGGTTCAGGATTCTGATAACCAAGCAAGAGGTTTTGCAGAAGCCATGGTCACCTCAG CTTGGTTCAGTTGGTCATTTGGATGTCTGGGATTATTTCCAACTGAAAAGATGAAGATGGGAGTATATGTACTGTTCAGTTCTCTTGTAAATGTTCGTGG AACTGGCACTGGGCAATGCATTCTAGATGCTGTTGCAGATCTGCCAATCGATCCTATGGACTTGCTGTTTCTACTTGGGCAGAACTCGGAAGATGCATTA TTGTCGTGTTGCCAGGTTGCAGATGAGAAGTCGATCCTAGCGTCAATTGAACAGTATGTTCTTGTGAATTATAGTGATCTCTTGGGCAAGAACTCCGACA CATCGAAGATAATGCAACTGATAAATCAATATGGTTTATGTCGGGGTATTGCCAATGGGCAGAACCAGAATTCGTACAGCCTTGAAGCTGAAAACAGTGT GCTTCATCTAGTCTCCCAAAATGAGTGGGATTTGCTCTCATCGAGAATTCACTATCTATCTTTGAAATGGTTATTTCAACAAGAGAAGATAAGCAAGCTA CTGGCTTTCCAAATGCTGAAATTCAGCAGAAGCAAGGGTTTAGATGCAACCTGTATGCTTGGCCCTTTGGATATTACTCAGACTGTGAGCTTGAAAACAA TTGCAGAGTTGGCATCGTCAGGAGATAACCATGCTGCAAGAATTCTTGTATACTTGTTATTACAGCTTTTTGAAGAAGAGGGTCAGGAGGAGGACATTTT ACTGGTATTACATCTCATGAAATCCGTCATTGAGACCGTACCAGAAGCACTTTGTGATGATGATGACGCTTGGCTTGCAGTGACAGTAAAGATGATAGAC TGTTTAGTCACCCGAAGAAAAGACGTCAAAAGCTTGTCTGATGAAGGGCTGCAAGTCATTGCAAATTTCTGTTTGATTTTGCACCAGTCCACAAAGAAAG TCCTGTTAGGCGCTTCCAACGCCATACTCTTCAACGTTTCCCTGGTCTCGATGGTTGACGCCTTGATGCGTGCAGCCTGCTCAAAAGGACCCTATTTGGT GGGCTACGGTGAAACAACATGTGGTGGAGAAAACCTGTTAGTCCTGCTCTTGCTCTGCTATTTTTCCTTAAGAAGTATACAAACTCTTCTTCCAGAATCC ATGGACTGGGAAACTCTACTAGAACCATCAAATGACAAAGGGTCACCTACCATGGGGATTCAACTGCATCGACTTGTGTCGGCTGATGCATTTCGGGGGA ACAAGAAGTGCTGTCCAAAGGGCTGCCATCTAACATCCATAACTGCTATACTACAAGGCCTAATGTTTTACAGCGACTCAAGGGTCTCAACCAACTGCAG CCTCTGCGTTTCCATGCTTTTGAACTGGCTGCCAAACCAAGAAAATGATGATGAGAATAACTGGTGCAGGCTGATTGTAGAAGAGATGGCAACGTCATTA GCTTTCCCTTGCTTCGCATCAAAATCGTTCCTCAATCGCCATAAGCCTGCTGTTCGTGTAACAGTTGCAATGCTGCAGAAGACCCATAATCCTCCTTCAT GGATCAGCAGTGCATTCGACAAAGCCTGCATTGATGGCATACTGAAGAACCTTAGTGCGAGTACTGTGACGAGAGAAATTCTAGAGCTGTTTCGACAGCT GCTGAATTCGAAACTGTTGAAAAGGATCAATTGTCTTGTTTAA
AA sequence Show only first row Show all	>Lus10022584 pacid=23178569 polypeptide=Lus10022584 locus=Lus10022584.g ID=Lus10022584.BGIv1.0 annot-version=v1.0 MRRRRRMWGCSGKCVAAAASSSQGIYGGAVLMWTIPMRWLTTDDEIQGEVLFVLYRLSLHAGDEESAGLLLAFSSKFWRFSLDVLPKTQNDTVRLNSLAL LTALAQRGYFENEYGNEINSMGSDEADSLMQTADERLDALPLTVLFSEAIKGSLLSSDRQIQASSLDLIMHYLTRDGAPGKEAQLLLEENIVDYVFEILS FTEHTDPVTNSCLLVLHLLSSAEMGFIERLVVGFSTLVPALCYIAKVPFHPVQEHALKLICSGIPNFPGILSSSHVEEIYLALTKMFKSHADGDLGMPLQ TFAIVCSLFSTLLGCSTLQTNMVMTVQEAINYAILACLNTSQKDPRQLLHAFDLVKKAYSQNYQVGSTDISGITDIRNCIINICTTRLLPWIVAAADEVD EEILLGTLETFHIILVQDSDNQARGFAEAMVTSAWFSWSFGCLGLFPTEKMKMGVYVLFSSLVNVRGTGTGQCILDAVADLPIDPMDLLFLLGQNSEDAL LSCCQVADEKSILASIEQYVLVNYSDLLGKNSDTSKIMQLINQYGLCRGIANGQNQNSYSLEAENSVLHLVSQNEWDLLSSRIHYLSLKWLFQQEKISKL LAFQMLKFSRSKGLDATCMLGPLDITQTVSLKTIAELASSGDNHAARILVYLLLQLFEEEGQEEDILLVLHLMKSVIETVPEALCDDDDAWLAVTVKMID CLVTRRKDVKSLSDEGLQVIANFCLILHQSTKKVLLGASNAILFNVSLVSMVDALMRAACSKGPYLVGYGETTCGGENLLVLLLLCYFSLRSIQTLLPES MDWETLLEPSNDKGSPTMGIQLHRLVSADAFRGNKKCCPKGCHLTSITAILQGLMFYSDSRVSTNCSLCVSMLLNWLPNQENDDENNWCRLIVEEMATSL AFPCFASKSFLNRHKPAVRVTVAMLQKTHNPPSWISSAFDKACIDGILKNLSASTVTREILELFRQLLNSKLLKRINCLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14180		ATPRD1	putative recombination initiat...		Lus10022584 [exp]	0	1
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Lus10011938 [exp]	8.1	0.7941
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Lus10039424 [exp]	13.3	0.7878
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10037223 [exp]	25.3	0.7644
AT5G66180			S-adenosyl-L-methionine-depend...		Lus10028444 [exp]	29.2	0.7358
AT4G11120			translation elongation factor ...		Lus10012296 [exp]	32.4	0.7422
AT4G32910			unknown protein		Lus10011625 [exp]	32.7	0.7417
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Lus10029688 [exp]	47.8	0.7119
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10018633 [exp]	52.2	0.7085
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10014103 [exp]	53.7	0.6965
AT5G14850			Alg9-like mannosyltransferase ...		Lus10033296 [exp]	55.7	0.7233

Compare expression of checked genes

Lus10022584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.