Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60580 472 / 6e-164 RING/U-box superfamily protein (.1.2.3.4) AT3G09760 372 / 1e-124 RING/U-box superfamily protein (.1) AT5G03180 310 / 8e-101 RING/U-box superfamily protein (.1.2) AT3G06330 201 / 4e-61 RING/U-box superfamily protein (.1.2.3) AT5G18760 169 / 2e-47 RING/U-box superfamily protein (.1) AT2G37950 70 / 1e-13 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G01070 61 / 1e-10 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G05830 59 / 6e-10 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G59000 55 / 2e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14260 52 / 2e-07 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021482 [exp] 876 / 0 AT5G60580 469 / 6e-163 RING/U-box superfamily protein (.1.2.3.4) Lus10037410 [exp] 605 / 0 AT5G60580 506 / 2e-176 RING/U-box superfamily protein (.1.2.3.4) Lus10041301 [exp] 592 / 0 AT2G28450 878 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10026501 [exp] 392 / 1e-131 AT3G09760 414 / 5e-140 RING/U-box superfamily protein (.1) Lus10019931 [exp] 362 / 4e-120 AT3G09760 360 / 2e-119 RING/U-box superfamily protein (.1) Lus10012791 [exp] 222 / 6e-67 AT3G06330 388 / 3e-132 RING/U-box superfamily protein (.1.2.3) Lus10033985 [exp] 222 / 5e-64 AT3G06330 384 / 7e-126 RING/U-box superfamily protein (.1.2.3) Lus10038632 [exp] 192 / 7e-56 AT3G06330 328 / 3e-109 RING/U-box superfamily protein (.1.2.3) Lus10012793 [exp] 139 / 4e-38 AT3G06330 192 / 8e-61 RING/U-box superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G013300 [exp] 548 / 0 AT5G60580 492 / 3e-171 RING/U-box superfamily protein (.1.2.3.4) Potri.006G129000 [exp] 437 / 4e-150 AT3G09760 381 / 7e-128 RING/U-box superfamily protein (.1) Potri.016G022900 [exp] 369 / 2e-123 AT5G60580 337 / 7e-111 RING/U-box superfamily protein (.1.2.3.4) Potri.006G024000 [exp] 353 / 5e-117 AT5G60580 361 / 4e-120 RING/U-box superfamily protein (.1.2.3.4) Potri.010G014950 [exp] 247 / 5e-77 AT3G06330 409 / 5e-141 RING/U-box superfamily protein (.1.2.3) Potri.010G014800 [exp] 247 / 7e-77 AT3G06330 409 / 8e-141 RING/U-box superfamily protein (.1.2.3) Potri.008G196400 [exp] 210 / 9e-63 AT3G06330 377 / 3e-128 RING/U-box superfamily protein (.1.2.3) Potri.010G195100 [exp] 64 / 2e-11 AT5G05830 206 / 9e-68 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G094000 [exp] 62 / 1e-10 AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.016G105900 [exp] 61 / 2e-10 AT5G05830 191 / 2e-61 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10022585 pacid=23178555 polypeptide=Lus10022585 locus=Lus10022585.g ID=Lus10022585.BGIv1.0 annot-version=v1.0 ATGGAGGAGAAGCTTTTGAATGAGATGAAGAACGAAGTGGGTTCTAGCCAATCTGCTGCTTCTCTTAGTAGTCTTCCTGTCCACAAGGCTGAAGACACAA CTGGAATAGTGGAAGAAGGCCACAATGGTCACAAGTGGAAGAAGAAAAACCTGTTTCTAGAGATACCAACAAGAACTTTGGAAGGATCTCCACAAACAGA TAGTGTTGTCGTTAAGATGCCACCAACAACACCTAGCCAAACACCAAGGAAGGTGAATTTCCTTCTCACGCCTACATCTGCTGATTGTAGAGGAGGAGGA GGAGTCATTGGATCCCCAACAGCTTCCACTCCATCCAGGGGGAGGTCTTCTTTGAAGAGTCTGTTGCCTAAAATAAGCTTCAAGTCTCGAATTTCCACGT TGAATAATGGAAAGCCAGCCAATCTACCTCCAGAAACCACTTCATTTACTGCAACGCCACAAGGACAGCCTTCCATCCCAAGATCATTGTCACTAACAAA GATTTTCACCCCTAGGATGAAAAGAACATCATCTCTGCCCCTTACACCGGATTCTATGCACAGTGAAAACATTAGTGGCACTCTCAATCCAACTAACGAA GGTCCATTAAACAAGATTGCTCGCTCACGCTCAGTCCCTGAACTTGACAAGGAAGGAAGCATACGAGGAATGGATTCATTCTTCCGTGTGATTCCTTCCA CTCCTAGACTTAGAGAAGGAGATCATATATTATCACGTCCTTCTTCCCCGGCTGTTTCTTCTGATACAGCTGACAATGATGATGGTGAAGATATACCTGA AGAAGAGGCTGTATGTAGGATATGTCTGGTTGAACTTTGTGAAGGAGGGGAGACCCTTAAGATGGAATGCAGTTGCAAAGGCGAACTTGCTCTGGCCCAT CAAGACTGTGCAGTGAAATGGTTTAGTATCAAAGGGAACAAGACTTGTGATGTGTGCAAGGAACAAGTTCAGAACTTGCCTGTTACTCTCTTACGGATAC AGAGTATGGTCTGGCAAGAAGTGCCCATACTCGTCATTGTTAGCATGCTTGCCTACTTTTGCTTCCTGGAGCAGCTTCTGGTAGGGCGTATGGGAACTGG TGCAATTGCTATATCTCTTCCATTTTCATGTGTGCTTGGTCTCCTATCGTCCATGATCTCATCAACCATGGTGAAGAGAAGATTCGTTTGGATTTATGCA TCAATCCAATTTGCATTAGTGGTTCTTTTTGCTCACATTTTCTACTCATTGGTTGGTGTACAAGCAGTTCTGTCTGTGCTACTGTCGACGTTTGCTGGAT TTGGTGTAGCCATGAGTGGAAGTTCAATCATCATCGAGTTTGTAAGATGGAGAAGACGGTGGCGAACAGAACAACAGCCGGTAAATTCATCTGGAGTAGC CCCTCCTTCAGCTACTGCTGCTGCAAGCCACCATACAATTGATGTATAA
AA sequence Show only first row Show all	>Lus10022585 pacid=23178555 polypeptide=Lus10022585 locus=Lus10022585.g ID=Lus10022585.BGIv1.0 annot-version=v1.0 MEEKLLNEMKNEVGSSQSAASLSSLPVHKAEDTTGIVEEGHNGHKWKKKNLFLEIPTRTLEGSPQTDSVVVKMPPTTPSQTPRKVNFLLTPTSADCRGGG GVIGSPTASTPSRGRSSLKSLLPKISFKSRISTLNNGKPANLPPETTSFTATPQGQPSIPRSLSLTKIFTPRMKRTSSLPLTPDSMHSENISGTLNPTNE GPLNKIARSRSVPELDKEGSIRGMDSFFRVIPSTPRLREGDHILSRPSSPAVSSDTADNDDGEDIPEEEAVCRICLVELCEGGETLKMECSCKGELALAH QDCAVKWFSIKGNKTCDVCKEQVQNLPVTLLRIQSMVWQEVPILVIVSMLAYFCFLEQLLVGRMGTGAIAISLPFSCVLGLLSSMISSTMVKRRFVWIYA SIQFALVVLFAHIFYSLVGVQAVLSVLLSTFAGFGVAMSGSSIIIEFVRWRRRWRTEQQPVNSSGVAPPSATAAASHHTIDV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60580			RING/U-box superfamily protein...		Lus10022585 [exp]	0	1
AT5G12200		PYD2	pyrimidine 2 (.1)		Lus10026817 [exp]	2.8	0.9094
AT5G60580			RING/U-box superfamily protein...		Lus10021482 [exp]	3.2	0.8712
AT3G18140			Transducin/WD40 repeat-like su...		Lus10042333 [exp]	4.9	0.8775
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Lus10043123 [exp]	5.1	0.8891
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Lus10012550 [exp]	6.5	0.8866
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10016320 [exp]	6.5	0.8573
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Lus10041543 [exp]	6.7	0.8807
AT5G10650			RING/U-box superfamily protein...		Lus10026226 [exp]	7.7	0.8864
					Lus10040816 [exp]	8.5	0.8498
AT1G13990			unknown protein		Lus10036787 [exp]	8.8	0.8699

Compare expression of checked genes

Lus10022585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.