Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05510 331 / 6e-116 Protein of unknown function (DUF1264) (.1) AT2G31985 321 / 4e-112 Protein of unknown function (DUF1264) (.1) AT4G18920 167 / 2e-51 Protein of unknown function (DUF1264) (.1) AT5G45690 162 / 2e-49 Protein of unknown function (DUF1264) (.1) AT1G29680 154 / 1e-46 Protein of unknown function (DUF1264) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021483 [exp] 224 / 6e-75 AT1G05510 140 / 6e-42 Protein of unknown function (DUF1264) (.1) Lus10005415 [exp] 97 / 3e-25 AT1G29680 233 / 1e-78 Protein of unknown function (DUF1264) (.1) Lus10005416 [exp] 81 / 1e-19 AT5G45690 109 / 5e-31 Protein of unknown function (DUF1264) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G148050 [exp] 93 / 1e-24 AT1G05510 0 / 1 Protein of unknown function (DUF1264) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06884 [flax] [poplar] DUF1264 Protein of unknown function (DUF1264)
Representative CDS sequence Show only first row Show all	>Lus10022586 pacid=23178655 polypeptide=Lus10022586 locus=Lus10022586.g ID=Lus10022586.BGIv1.0 annot-version=v1.0 ATGTCGTCCCAACATCCAGAAGTTCCAGGGGATCCGACGGCCACCACCACATCCCTGCTGGAGAAAGCTACCGCCTCCATCCAGCGATTCGGCCCCATCA GCCACATCCACCAACACCTCTGCGCGTTTCATTTCTACAGCCATGACATGACGAGGCAAGTGGAGGCCCACCACTTCTGCGGGCACCTGAACGAGGAAGT GAGGCAGTGTCTCATATTCAATAGTCCTGACGCAGACGCCCGCCTGATTGGGGTGGAGTACATAATAACGGAGCCTCTTTTTGCAACTCTGCCTGACGAG GAGAAGCCGATGTGGCACTCTCACGATTATGAAGTGAAGGGAGGATACTTATTCATGCCAGGAATCCCTGGCCCCGTGGAACGCCAAGACCTGGAGAAGG TGGCCAAGACATACGGCAAGACTATCCACTTCTGGCAGGTTGACCGTGGGGACAACCTCCCACTCGGACTCCCCCAGATCATGTTCTCCCTCACCCGCGA GGGCCAGCTCTACGACGAGCTTGCTCAAGATGTGGAGAAGAGGTACAAGGTGTCGTTTGCGGAACAGAGGGAGAGGAGGAAGGACATGGAAGGGCCAGCG ATGGGGCGGCATCCTCTTGCAAACGGTGCTGGCAGGGGGCTCCAGACTGTGCTTAACGAGGTTGATGTCAAGCCTCCTTCTGGAAGTACTCCTCGAGTCT TTGTTTAA
AA sequence Show only first row Show all	>Lus10022586 pacid=23178655 polypeptide=Lus10022586 locus=Lus10022586.g ID=Lus10022586.BGIv1.0 annot-version=v1.0 MSSQHPEVPGDPTATTTSLLEKATASIQRFGPISHIHQHLCAFHFYSHDMTRQVEAHHFCGHLNEEVRQCLIFNSPDADARLIGVEYIITEPLFATLPDE EKPMWHSHDYEVKGGYLFMPGIPGPVERQDLEKVAKTYGKTIHFWQVDRGDNLPLGLPQIMFSLTREGQLYDELAQDVEKRYKVSFAEQRERRKDMEGPA MGRHPLANGAGRGLQTVLNEVDVKPPSGSTPRVFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05510			Protein of unknown function (D...		Lus10022586 [exp]	0	1
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10019774 [exp]	3.2	0.9013
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10010766 [exp]	4.5	0.9071
AT1G67540			unknown protein		Lus10037003 [exp]	8.9	0.8630
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10007702 [exp]	9.2	0.8873
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10015026 [exp]	10.2	0.8793
					Lus10018997 [exp]	11.2	0.8930
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10043167 [exp]	11.6	0.8843
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031350 [exp]	12.2	0.8832
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10033563 [exp]	13.8	0.8436
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036113 [exp]	15.3	0.8782

Compare expression of checked genes

Lus10022586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.