Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23700 316 / 1e-105 Nucleic acid-binding proteins superfamily (.1) AT5G30510 82 / 4e-17 ARRPS1, RPS1 ribosomal protein S1 (.1) AT1G71720 69 / 2e-12 PDE338 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) AT1G12800 52 / 4e-07 Nucleic acid-binding, OB-fold-like protein (.1) AT4G29060 51 / 7e-07 EMB2726 embryo defective 2726, elongation factor Ts family protein (.1.2) AT3G11964 44 / 0.0001 RNA binding;RNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021484 [exp] 563 / 0 AT3G23700 197 / 4e-60 Nucleic acid-binding proteins superfamily (.1) Lus10028698 [exp] 74 / 5e-14 AT1G71720 516 / 0.0 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) Lus10028726 [exp] 73 / 8e-14 AT1G71720 506 / 8e-177 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) Lus10017100 [exp] 69 / 2e-12 AT5G30510 590 / 0.0 ribosomal protein S1 (.1) Lus10037822 [exp] 66 / 1e-11 AT5G30510 583 / 0.0 ribosomal protein S1 (.1) Lus10011108 [exp] 49 / 6e-06 AT4G29060 1031 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Lus10000288 [exp] 46 / 5e-05 AT1G12800 478 / 5e-157 Nucleic acid-binding, OB-fold-like protein (.1) Lus10022250 [exp] 43 / 0.0005 AT5G14580 1244 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G148500 [exp] 347 / 1e-117 AT3G23700 439 / 2e-153 Nucleic acid-binding proteins superfamily (.1) Potri.005G197900 [exp] 70 / 7e-13 AT1G71720 501 / 2e-174 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) Potri.002G063400 [exp] 70 / 9e-13 AT1G71720 514 / 2e-179 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) Potri.008G101100 [exp] 66 / 2e-11 AT5G30510 615 / 0.0 ribosomal protein S1 (.1) Potri.010G150300 [exp] 64 / 6e-11 AT5G30510 575 / 0.0 ribosomal protein S1 (.1) Potri.018G083900 [exp] 47 / 3e-05 AT4G29060 691 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Potri.016G062600 [exp] 43 / 0.0003 AT3G11964 2209 / 0.0 RNA binding;RNA binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF00575 [flax] [poplar] S1 S1 RNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10022587 pacid=23178682 polypeptide=Lus10022587 locus=Lus10022587.g ID=Lus10022587.BGIv1.0 annot-version=v1.0 ATGCCGGGAGGAACTTTCACCCTCTCCCATGGAGAATCGCTAGCTACGTCCCAACAGCTCCACTTCCTCTCTCCCCGTTCACCGTTAATTAAGCTGCCAT CGTTTGCTCATCTGAGAAATACCCACAAACTAAGACACTCTTCTTCAGGTCTCGTTGTCAGGGCTGGAGGAGATTCCAATGGGTCACCCTCCGCCACCAC CGCCAGCAGAGTTGTTCCTGATGTCGACAGGAAAGCTCGGAGACAAGCTGACTGGAACACGGCAAGACAACTTAAGGCCGGTGGGTCGGTACATGTTGTC AAGGTTGTGGGATGGAATAGCGGGGGTTTAATTGTGCGTTTCCATTCTCTTCTGGGTTTCCTTCCCTTTACACAGCTCAGTCCTGCTAACCTTTTTAAAG AGCCGCGCAAAAGTTATAATATTCGAACCGTGGCAGCAAGTATGGTCAATTCACTCATTTCCGTGAAGGTAGTTGCGGCAAACGAGGAAAACAGGATCTT AATTTTCTCCGAAAAGGAAGTTGCTTGGGATAAGTACTCCAAAGGTGTCAAAGTGGGGGATGTCTTCGAAGGACGAGTAGGATTGGTCGACGATTATGGT GCCTTTGTTCACTTGCGTTTCCCTGATGGGCTGTATCACCTCACTGGACTAGTACGTCTATCAGAAGTGTCATGGGATTTTGTTCGAGATGCAAGAGATG TCTTGACAAGTGGTGAACAAGTGAAGGTCAAAGTATGCAAGATTGATAGGAAAAATACAAGGTTTGAATTGTCAATGAAACAGTTACAAGATGACCCTCT GCTACAAACACTGGACAAAGTCCTTCCTCAGGATGGTTCAGTTGATGCATCTCTTAGTGATGTAAGTGGAGGCATCGTGATTGAACCACTTCCTGGACTT GCAGGAATATTGAAGGAGCTTCTTCTCGAAGAAGGTATAGAGGACGTAAGAATTACTCGAGAAGGATTCGAGAAGCGTGTAGTCTCGCAAGATCTCCAAC TTTGGCTATCAAATGCTCTACCTAAAGATAGAAAGTTCGTCCTCTTGGCCCGTGCTGGTAGGCAGGTACAGGAAATACAGTTGACGACAATGCTTGATCA GCAAGGCATCAAGAAGGTGTTGCAGCATGTTCTAGAACGTGTTCCGTGA
AA sequence Show only first row Show all	>Lus10022587 pacid=23178682 polypeptide=Lus10022587 locus=Lus10022587.g ID=Lus10022587.BGIv1.0 annot-version=v1.0 MPGGTFTLSHGESLATSQQLHFLSPRSPLIKLPSFAHLRNTHKLRHSSSGLVVRAGGDSNGSPSATTASRVVPDVDRKARRQADWNTARQLKAGGSVHVV KVVGWNSGGLIVRFHSLLGFLPFTQLSPANLFKEPRKSYNIRTVAASMVNSLISVKVVAANEENRILIFSEKEVAWDKYSKGVKVGDVFEGRVGLVDDYG AFVHLRFPDGLYHLTGLVRLSEVSWDFVRDARDVLTSGEQVKVKVCKIDRKNTRFELSMKQLQDDPLLQTLDKVLPQDGSVDASLSDVSGGIVIEPLPGL AGILKELLLEEGIEDVRITREGFEKRVVSQDLQLWLSNALPKDRKFVLLARAGRQVQEIQLTTMLDQQGIKKVLQHVLERVP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23700			Nucleic acid-binding proteins ...		Lus10022587 [exp]	0	1
AT3G27925		DEGP, DegP1, DE...	DegP protease 1 (.1)		Lus10008781 [exp]	2.0	0.9590
AT5G20140			SOUL heme-binding family prote...		Lus10013345 [exp]	2.2	0.9528
AT1G73885			unknown protein		Lus10034345 [exp]	2.2	0.9680
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10018163 [exp]	2.4	0.9597
AT1G73885			unknown protein		Lus10005112 [exp]	2.4	0.9671
AT5G64380			Inositol monophosphatase famil...		Lus10007061 [exp]	4.9	0.9387
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Lus10040686 [exp]	7.4	0.9399
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Lus10041904 [exp]	9.2	0.9490
AT3G09050			unknown protein		Lus10035515 [exp]	9.2	0.9356
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10000674 [exp]	10.6	0.9456

Compare expression of checked genes

Lus10022587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.