Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36250 421 / 1e-145 Protein phosphatase 2C family protein (.1) AT3G02750 416 / 7e-143 Protein phosphatase 2C family protein (.1.2.3) AT1G16220 391 / 3e-133 Protein phosphatase 2C family protein (.1) AT1G79630 385 / 9e-131 Protein phosphatase 2C family protein (.1.2.3) AT1G03590 368 / 2e-124 Protein phosphatase 2C family protein (.1) AT4G03415 367 / 4e-124 Protein phosphatase 2C family protein (.1.2) AT5G01700 319 / 2e-106 Protein phosphatase 2C family protein (.1.2) AT5G27930 310 / 3e-103 Protein phosphatase 2C family protein (.1.2) AT3G05640 306 / 9e-102 Protein phosphatase 2C family protein (.1.2) AT3G16800 276 / 4e-90 Protein phosphatase 2C family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021486 [exp] 739 / 0 AT3G02750 418 / 6e-143 Protein phosphatase 2C family protein (.1.2.3) Lus10041277 [exp] 573 / 0 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3) Lus10037431 [exp] 568 / 0 AT5G21160 643 / 0.0 LA RNA-binding protein (.1.2.3) Lus10000402 [exp] 409 / 5e-140 AT1G79630 570 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10027122 [exp] 405 / 2e-138 AT1G16220 567 / 0.0 Protein phosphatase 2C family protein (.1) Lus10039802 [exp] 374 / 9e-127 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10018570 [exp] 374 / 1e-126 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10033708 [exp] 362 / 3e-122 AT1G03590 593 / 0.0 Protein phosphatase 2C family protein (.1) Lus10031631 [exp] 361 / 1e-121 AT1G03590 600 / 0.0 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G054200 [exp] 468 / 4e-163 AT3G02750 657 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.013G085500 [exp] 448 / 8e-156 AT3G02750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.004G066200 [exp] 426 / 8e-147 AT1G16220 526 / 0.0 Protein phosphatase 2C family protein (.1) Potri.001G473300 [exp] 422 / 5e-145 AT1G16220 538 / 0.0 Protein phosphatase 2C family protein (.1) Potri.019G103100 [exp] 379 / 1e-128 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G144100 [exp] 376 / 1e-127 AT4G03415 696 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G127900 [exp] 335 / 1e-111 AT5G01700 368 / 9e-125 Protein phosphatase 2C family protein (.1.2) Potri.006G105000 [exp] 329 / 3e-109 AT5G01700 368 / 1e-124 Protein phosphatase 2C family protein (.1.2) Potri.005G021900 [exp] 320 / 3e-107 AT5G27930 571 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G006200 [exp] 317 / 6e-106 AT3G05640 460 / 9e-163 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10022588 pacid=23178521 polypeptide=Lus10022588 locus=Lus10022588.g ID=Lus10022588.BGIv1.0 annot-version=v1.0 ATGCAGGTGGAAAAAGGGGTCGTAGGGGATCCTGCCTGTTCCATGGGGTTGGATTGTTTCCTCAGCATAGCCAGGGCCCTTGGTACGTCTTGTTTTACCG ATGAAGGTACTCGTAGTAACGGTGGCGGCTCCGGTGGGCTACGGCAATCGGCTTCCACCAACGCGGAAGCCATTAAGCGCCGTAAGAAAAGGCAGATGAT GATGAAGCGGAGTGATTCGAAGCTGGAGTTGTGGTTGCATAGGATCCCTGGGAGATTGTTCTTGAATAGCTCTACGGATCTTGTGTCTCTGTTTACTAAG CCTGGGAAGAAAGGGGTCAATCAGGATGCCATGATTTTCTGGGAGAATTTTGGTCCATCTGAAGACACAATATTTTGTGGGATTTTTGACGGGCATGGTC CCAGTGGCCATCTTGTTGCGAAGAAAGTGCGGGACTCTCTGCCGTTAAAATTGAGAGCACAGTGGGAACTAGATTGTACGAGCAGTGAGCTTGGAAGAGC AGCAGCATTAACAGAATGTTCGCTCAATTCAGTTGATTTTGAATCATTAGCGAGCATAGACAATGGGAAAAGGGAAATGCAGACTGACAACGTCTTGGCG TTTAAAGACTCATTTTTGAAGGCCTTCAAGGCTATGGACAAAGAACTGCAGTTGCATCCTTATATTGATTGCTTCTGCAGTGGGACAACAGCAGTAACGG TGATCAAGCAGGGGCAGGATCTTATAATTGGGAATGTTGGTGATTCAAGAGCTGTGCTGGCTAATAGACATACCGACAACACCCTAATTGCAGCTCAGTT AACTGAAGATCTCAAACCGTCACTTCCTAGAGAAGCAGAGAGGATTAAGATGTGCAAGGGGCGAGTTTTTGCCCTTCCAAATGAACCTGATGTTGCAAGG ATTTGGCTGCCAAACAGCAACTCCCCTGGACTCGCCATGGCCCGTGCTTTTGGTGATTTTTGCCTCAAAGACTTTGGCTTGATCTCAGTCCCTGAGATTT CACACCATTGTATCACAGATAAGGATGAGTTTGTGGTGTTGGCTACTGATGGAGTATGGGATGTTATGTCAAATTCTGAGGTAGTGAGCATAGTGGGATC AGTCCATCCTTCAAGTGCAGCTCAAACCCTGGTTGAATCTGCGCATCGAACTTGGAGGACCAAATATCCTACATCAAAGACAGATGATTGTGCTGCCGTC TGCCTCTTCCTCAGCTCCTCTTGA
AA sequence Show only first row Show all	>Lus10022588 pacid=23178521 polypeptide=Lus10022588 locus=Lus10022588.g ID=Lus10022588.BGIv1.0 annot-version=v1.0 MQVEKGVVGDPACSMGLDCFLSIARALGTSCFTDEGTRSNGGGSGGLRQSASTNAEAIKRRKKRQMMMKRSDSKLELWLHRIPGRLFLNSSTDLVSLFTK PGKKGVNQDAMIFWENFGPSEDTIFCGIFDGHGPSGHLVAKKVRDSLPLKLRAQWELDCTSSELGRAAALTECSLNSVDFESLASIDNGKREMQTDNVLA FKDSFLKAFKAMDKELQLHPYIDCFCSGTTAVTVIKQGQDLIIGNVGDSRAVLANRHTDNTLIAAQLTEDLKPSLPREAERIKMCKGRVFALPNEPDVAR IWLPNSNSPGLAMARAFGDFCLKDFGLISVPEISHHCITDKDEFVVLATDGVWDVMSNSEVVSIVGSVHPSSAAQTLVESAHRTWRTKYPTSKTDDCAAV CLFLSSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36250			Protein phosphatase 2C family ...		Lus10022588 [exp]	0	1
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10014930 [exp]	5.6	0.8218
AT1G34630			unknown protein		Lus10034188 [exp]	7.7	0.7734
AT2G15230		ATLIP1	lipase 1 (.1)		Lus10002808 [exp]	8.8	0.8059
AT2G15230		ATLIP1	lipase 1 (.1)		Lus10027861 [exp]	9.1	0.8063
AT1G69360			Plant protein of unknown funct...		Lus10036807 [exp]	11.5	0.7790
					Lus10032008 [exp]	11.8	0.7962
AT1G58848			Disease resistance protein (CC...		Lus10028076 [exp]	12.5	0.7943
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Lus10021511 [exp]	14.1	0.7975
AT2G15230		ATLIP1	lipase 1 (.1)		Lus10002809 [exp]	15.0	0.7755
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10038819 [exp]	17.5	0.7904

Compare expression of checked genes

Lus10022588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.