Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26980 682 / 0 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT5G21326 652 / 0 Ca2+regulated serine-threonine protein kinase family protein (.1) AT1G30270 582 / 0 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT1G01140 568 / 0 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT5G35410 487 / 1e-171 ATSOS2, CIPK24, SOS2, SnRK3.11 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) AT4G24400 464 / 2e-162 ATCIPK8, PKS11, CIPK8, SnRK3.13 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) AT4G30960 412 / 4e-142 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G45820 406 / 7e-140 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G10930 404 / 7e-139 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT5G21222 416 / 1e-138 protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021488 [exp] 709 / 0 AT2G26980 591 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10042816 [exp] 569 / 0 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10028115 [exp] 568 / 0 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10030210 [exp] 551 / 0 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10002692 [exp] 550 / 0 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10019411 [exp] 507 / 3e-179 AT5G35410 729 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10043264 [exp] 473 / 5e-164 AT5G35410 630 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10032822 [exp] 455 / 5e-159 AT4G24400 738 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Lus10021852 [exp] 424 / 5e-147 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G222600 [exp] 745 / 0 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.009G021000 [exp] 733 / 0 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.006G062800 [exp] 580 / 0 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.014G104200 [exp] 572 / 0 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.018G119200 [exp] 570 / 0 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.002G177900 [exp] 568 / 0 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.018G130500 [exp] 493 / 4e-174 AT5G35410 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.006G068400 [exp] 476 / 2e-167 AT5G35410 686 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.002G109000 [exp] 456 / 2e-159 AT4G24400 652 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Potri.016G133500 [exp] 425 / 6e-147 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10022590 pacid=23178668 polypeptide=Lus10022590 locus=Lus10022590.g ID=Lus10022590.BGIv1.0 annot-version=v1.0 ATGATGAGTCAACCTAAAGTTAAGCGGAGAGTGGGTAAGTATGAAGTGGGAAGAACCATCGGCGAAGGAACATTCGCAAAAATTAAGCGGGAGATAGCCA CGATGAAGCTTATACAGCACCCGAATGTGGTCACTTTATATGAGGTAATGGGAAGCAAGACTAAGATATTCATTGTCATGGAGTTCGTCACTGGAGGAGA GCTTTTTGATAAAATTGTAAATCATGGTCGAATGAGGGAAGATGAAGCTAGGAGGTACTTTCAGCAGCTTATTAATGCGGTTGATTATTGTCATAGCAGG GGTGTCTTCCACAGAGATCTTAAGCCAGAAAACCTCCTGTTGGATGCATACGGAAACCTCAAGGTTTCGGATTTTGGTTTAAGTGCACTATCACAGCAAG TCCGGGATGATGGCTTGCTTCATACAACTTGTGGGACACCAAACTATGTAGCTCCTGAGGTTCTCAATGATGAAGGATATGATGGAGCCACGGCAGATCT GTGGTCGTGTGGCGTGATACTCTTCGTGCTGCTAGCAGGGTACTTGCCTTTTGACGACTCTAATCTTATGAACCTGTATAAAAAAATTTCGGCTGGTGAG TTCACTTGCCCCCCCTGGCTCTCTTTACCTGCCATGAAATTGATTGCTCGAATATTGAATCCGAACCCAATCAATCGCATAACGATTCCTGAAATCTTGG AGGATGAATGGTTTAGAAAGGATTACAAGCGTCCTGTTTTTGAGGAGAAAGAGAGACCCAACTTAGATGATGTTGAAGCTGTATTTAAGGACTCTGAAGA ATATCATGTGACAGAGAAGAAGGAAGAACAACCGACTATCATGAACGCATTCGACTTGATTTCCATGTCGAAAGGATTGAATCTTGAGAATTTGCTTGAT GCTGAACAGCCGGTATTTAAAAGGGAAACAAGGTTCACGTCCAGGAGCTCAGCCAATGAGATCATCCACAAGATTGAAGAAGCTGCAAAACCTCTTGGTT TTGATGTTCATAAGAAAAATTACAAGATGAGGCTTGAGAACATGATAGCTGGTAGGAAAGGAAATCTCAACGTTGCAACCGAGATATTTCAAGTAGCACC ATCTCTTCATATGGTGGAAGTCCGGAAAGCAAAAGGAGACACCTTGGAGTTCCATAAGTTCTACAAGAATCTCTCAACCTGTCTTGAGGATGTGGTATGG AGGACTGAAGAGGACTAG
AA sequence Show only first row Show all	>Lus10022590 pacid=23178668 polypeptide=Lus10022590 locus=Lus10022590.g ID=Lus10022590.BGIv1.0 annot-version=v1.0 MMSQPKVKRRVGKYEVGRTIGEGTFAKIKREIATMKLIQHPNVVTLYEVMGSKTKIFIVMEFVTGGELFDKIVNHGRMREDEARRYFQQLINAVDYCHSR GVFHRDLKPENLLLDAYGNLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDEGYDGATADLWSCGVILFVLLAGYLPFDDSNLMNLYKKISAGE FTCPPWLSLPAMKLIARILNPNPINRITIPEILEDEWFRKDYKRPVFEEKERPNLDDVEAVFKDSEEYHVTEKKEEQPTIMNAFDLISMSKGLNLENLLD AEQPVFKRETRFTSRSSANEIIHKIEEAAKPLGFDVHKKNYKMRLENMIAGRKGNLNVATEIFQVAPSLHMVEVRKAKGDTLEFHKFYKNLSTCLEDVVW RTEED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26980		CIPK3, SnRK3.17	SNF1-RELATED PROTEIN KINASE 3....		Lus10022590 [exp]	0	1
AT5G50175			unknown protein		Lus10043318 [exp]	5.5	0.8685
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10029438 [exp]	5.9	0.8677
AT5G50175			unknown protein		Lus10019469 [exp]	7.1	0.8651
AT2G39650			Protein of unknown function (D...		Lus10002695 [exp]	9.4	0.8674
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041685 [exp]	10.8	0.8581
AT2G34500		CYP710A1	cytochrome P450, family 710, s...		Lus10028129 [exp]	13.2	0.8391
AT1G11300			protein serine/threonine kinas...		Lus10018516 [exp]	13.6	0.8761
AT2G47485			unknown protein		Lus10028487 [exp]	21.4	0.8477
AT4G24290			MAC/Perforin domain-containing...		Lus10012717 [exp]	23.4	0.8787
AT1G26940			Cyclophilin-like peptidyl-prol...		Lus10037197 [exp]	56.9	0.8154

Compare expression of checked genes

Lus10022590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.