Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02800 449 / 4e-157 Kin2, APK2B protein kinase 2B (.1.2) AT1G69790 445 / 6e-156 Protein kinase superfamily protein (.1) AT1G14370 439 / 3e-153 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT5G02290 425 / 3e-148 NAK Protein kinase superfamily protein (.1.2) AT1G26970 423 / 6e-147 Protein kinase superfamily protein (.1) AT3G55450 406 / 9e-141 PBL1 PBS1-like 1 (.1.2) AT2G39660 405 / 2e-140 BIK1 botrytis-induced kinase1 (.1) AT1G07570 403 / 3e-139 APK1A Protein kinase superfamily protein (.1.2.3) AT2G28930 396 / 2e-136 APK1B protein kinase 1B (.1.2.3) AT5G15080 395 / 5e-135 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021489 [exp] 738 / 0 AT2G02800 459 / 3e-161 protein kinase 2B (.1.2) Lus10012850 [exp] 444 / 3e-155 AT2G02800 614 / 0.0 protein kinase 2B (.1.2) Lus10023794 [exp] 426 / 9e-149 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10030496 [exp] 422 / 6e-147 AT2G02800 551 / 0.0 protein kinase 2B (.1.2) Lus10024391 [exp] 422 / 1e-146 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 419 / 1e-145 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10002697 [exp] 415 / 4e-144 AT1G07570 543 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10000954 [exp] 412 / 4e-143 AT1G07570 535 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10016537 [exp] 404 / 3e-139 AT2G28930 581 / 0.0 protein kinase 1B (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G020700 [exp] 584 / 0 AT1G14370 446 / 7e-156 PBS1-like 2, kinase 1, protein kinase 2A (.1) Potri.008G148000 [exp] 458 / 8e-161 AT2G02800 604 / 0.0 protein kinase 2B (.1.2) Potri.010G093700 [exp] 455 / 2e-159 AT2G02800 627 / 0.0 protein kinase 2B (.1.2) Potri.008G056400 [exp] 427 / 9e-149 AT1G07570 528 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G203400 [exp] 423 / 4e-147 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3) Potri.001G240400 [exp] 421 / 3e-146 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.016G094300 [exp] 420 / 4e-146 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.009G031300 [exp] 415 / 5e-144 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.017G077300 [exp] 404 / 2e-138 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 402 / 8e-138 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10022591 pacid=23178541 polypeptide=Lus10022591 locus=Lus10022591.g ID=Lus10022591.BGIv1.0 annot-version=v1.0 ATGGGGAATTGCTTGAGGCAGCCTGCCAAATTGGCTCATGCTTCTTCTACTACTATCGCTTCCTCTGAAAGTGGGAAGTTTCGGGATGATCCAAAACAAG TGACCAACTCTGATTCAAAGCGAATTACTGTTGAAAGCCTGAACAAGGCCTTGATAGCATCCAAGTTTGATGCATCTGTCCCCAGCAATCTCAAGTCCTT TAGCTTCAACGATCTAAGGAATGCCACCAGGAACTTCAAGTCCGAAACATTGCTTGGAGAAGGAGGTTTCGGGTGCGTGTTCAAAGGGTGGATTGATGGG AACACTTTCGCACCTGCTAAACCAGGAACTGGGATTGTTGTAGCAATCAAGAAGCTCAAGTCTGAGAGCTTCCAGGGCCATAAAGAGTGGCTGACTGAAG TGAACTATCTGGGTACGCTTCATCATCAGAATCTAGTAAAACTCATTGGCTATTGCTCCGAGTCTGATAACAGGCTGCTGGTTTACGAGTTTATGCCTAA AGGGAGCTTGGAGAACCATTTGTTTAGAAAAGGTGTTCAGCCAATTGCTTGGGTAACACGGATGCAAATTGCACTTGACGTGGCGAGAGGGCTGTCCTTC TTACATGGATTAAGTGCCAATGTAATCTATCGTGATCTCAAGGCATCAAATATTCTACTTGATTCGGGCTTTAATGCAAAGCTCTCTGATTTTGGATTAG CGAGAGATGGTCCTACAGGCGATAACACTCATGTTTCGACGAGAGTAGTGGGAACTCGAGGTTATGCTGCACCCGAATACGTAGCTACAGGACACTTGAC TCCTAAAAGCGATGTGTACAGTTTTGGTGTGGTGTTATTAGAGTTACTATCCGGAAGAAGGGCCATGGACGACGAGAGGGTTGGAGCTGTGGACGAAACC TTGGTGGACTGGGCAAGACCTTTCCTGACGGATAACAGGCGAGTTTTACGTATAATGGATACCCGGTTAGGGGGTCAGTACTCAAAGAAAGGAGCACAGG TTGCTGCTGCACTCGCGCTGCAATGCCTGCACACAGACCCCAAAAACCGGCCTTCCATGGTTCATGTTGTGGGCACGTTAGAGAACCTCAACAACCCTAA GGTGACACCAAGCACCCCACCTCCTGGAAGTAACGTGAGCAAGCATACGAATGGCCCTCAGCGAACGCCATCCAGGGGATCAAACTTGTCGTGA
AA sequence Show only first row Show all	>Lus10022591 pacid=23178541 polypeptide=Lus10022591 locus=Lus10022591.g ID=Lus10022591.BGIv1.0 annot-version=v1.0 MGNCLRQPAKLAHASSTTIASSESGKFRDDPKQVTNSDSKRITVESLNKALIASKFDASVPSNLKSFSFNDLRNATRNFKSETLLGEGGFGCVFKGWIDG NTFAPAKPGTGIVVAIKKLKSESFQGHKEWLTEVNYLGTLHHQNLVKLIGYCSESDNRLLVYEFMPKGSLENHLFRKGVQPIAWVTRMQIALDVARGLSF LHGLSANVIYRDLKASNILLDSGFNAKLSDFGLARDGPTGDNTHVSTRVVGTRGYAAPEYVATGHLTPKSDVYSFGVVLLELLSGRRAMDDERVGAVDET LVDWARPFLTDNRRVLRIMDTRLGGQYSKKGAQVAAALALQCLHTDPKNRPSMVHVVGTLENLNNPKVTPSTPPPGSNVSKHTNGPQRTPSRGSNLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10022591 [exp]	0	1
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10021489 [exp]	1.0	0.9843
					Lus10033269 [exp]	2.0	0.9716
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10022292 [exp]	3.5	0.9572
AT1G11905			B-cell receptor-associated pro...		Lus10020025 [exp]	3.9	0.9605
AT5G53110			RING/U-box superfamily protein...		Lus10023086 [exp]	3.9	0.9572
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10029495 [exp]	4.0	0.9530
AT2G19130			S-locus lectin protein kinase ...		Lus10042266 [exp]	4.2	0.9557
AT3G51000			alpha/beta-Hydrolases superfam...		Lus10028340 [exp]	5.3	0.9535
AT5G18150			Methyltransferase-related prot...		Lus10020287 [exp]	6.0	0.9411
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022195 [exp]	7.5	0.9410

Compare expression of checked genes

Lus10022591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.