Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02040 291 / 3e-101 PRA1.A1 prenylated RAB acceptor 1.A1 (.1.2) AT5G05987 257 / 9e-88 PRA1.A2 prenylated RAB acceptor 1.A2 (.1) AT3G11397 253 / 3e-86 PRA1.A3 prenylated RAB acceptor 1.A3 (.1) AT3G11402 254 / 2e-79 Cysteine/Histidine-rich C1 domain family protein (.1.2) AT5G07110 40 / 0.0005 PRA1.B6 prenylated RAB acceptor 1.B6 (.1) AT5G01640 40 / 0.0007 PRA1.B5 prenylated RAB acceptor 1.B5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021492 [exp] 385 / 2e-138 AT5G02040 297 / 1e-103 prenylated RAB acceptor 1.A1 (.1.2) Lus10030160 [exp] 280 / 8e-97 AT5G05987 308 / 1e-107 prenylated RAB acceptor 1.A2 (.1) Lus10001021 [exp] 270 / 1e-92 AT5G05987 301 / 1e-104 prenylated RAB acceptor 1.A2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G091300 [exp] 334 / 5e-118 AT5G02040 320 / 1e-112 prenylated RAB acceptor 1.A1 (.1.2) Potri.010G198000 [exp] 295 / 2e-102 AT5G05987 253 / 3e-86 prenylated RAB acceptor 1.A2 (.1) Potri.008G060400 [exp] 291 / 3e-101 AT3G11397 266 / 4e-91 prenylated RAB acceptor 1.A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03208 [flax] [poplar] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Lus10022592 pacid=23178590 polypeptide=Lus10022592 locus=Lus10022592.g ID=Lus10022592.BGIv1.0 annot-version=v1.0 ATGGATTGGGGGACCGTAACGTCACAGGACTTGATCGATGCACTCCGCGAAGTCGACTGGTCATCTCCACCACGCCCTCTCTCGGAATTCTTCTCCAGAT TCACCGTCCCTAAGTCCTCCGCCGCTTGGAACAGCCGCCTCAAATGCAACTTCTACTACTATCGCACGAATTACTTCCTTATGATCGTTCTAATTCTTGG AATCGGTTTCCTCAGAAGGCCGCTCTCCGTTGTCGCTGTTCTTTCCGCAGCTCTTTGCTTGGCTCTTCTGAATGACAGTTTTGCAGGGATCTTCAGTGAG AAAGTAACCAGAACCGTGAGGCAATTCTCTCCACATTTAGCAGCAAAGATGCGGCCTCCTCTTACGCCCGTCATTCGCGGACGTCGGTCTGCCAAGAGAC CAATCTACATTTGTGGCCGGCCTCGTTGGATGTTCGTCACGGGGTTCTCATTTGTGAGTTTTCTGTTTTGGTATGTCTCGGGTGCACTCCTGATCCTGTC GTGGGCACTTGCCGTGGGACTTCTTGGTACTATTACACATGCCAGTTTTAGAACACCTAATCTTAAAGCCCGGTTGAACACATTCAGAGAGGAATTCCGT GCTGTTTGGCGCAACTACAATGATCTGTAG
AA sequence Show only first row Show all	>Lus10022592 pacid=23178590 polypeptide=Lus10022592 locus=Lus10022592.g ID=Lus10022592.BGIv1.0 annot-version=v1.0 MDWGTVTSQDLIDALREVDWSSPPRPLSEFFSRFTVPKSSAAWNSRLKCNFYYYRTNYFLMIVLILGIGFLRRPLSVVAVLSAALCLALLNDSFAGIFSE KVTRTVRQFSPHLAAKMRPPLTPVIRGRRSAKRPIYICGRPRWMFVTGFSFVSFLFWYVSGALLILSWALAVGLLGTITHASFRTPNLKARLNTFREEFR AVWRNYNDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02040		PRA1.A1	prenylated RAB acceptor 1.A1 (...		Lus10022592 [exp]	0	1
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10040912 [exp]	1.4	0.8936
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10025358 [exp]	5.3	0.8834
AT5G35460			unknown protein		Lus10017161 [exp]	9.8	0.8278
AT5G01960			RING/U-box superfamily protein...		Lus10000996 [exp]	10.5	0.8252
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10022804 [exp]	10.8	0.8494
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10034750 [exp]	12.0	0.8256
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Lus10027027 [exp]	14.3	0.8320
AT4G29850			Eukaryotic protein of unknown ...		Lus10016385 [exp]	15.5	0.8238
AT5G17280			unknown protein		Lus10041805 [exp]	16.5	0.8130
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10032079 [exp]	23.5	0.8125

Compare expression of checked genes

Lus10022592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.