Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37840 829 / 0 Protein kinase superfamily protein (.1.2) AT3G53930 786 / 0 Protein kinase superfamily protein (.1.2) AT3G61960 368 / 1e-118 Protein kinase superfamily protein (.1.2) AT1G49180 254 / 2e-77 protein kinase family protein (.1.2) AT2G30360 194 / 8e-55 PKS5, CIPK11, SnRK3.22, SIP4 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) AT1G30270 178 / 1e-48 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT3G01090 178 / 3e-48 AKIN10, SnRK1.1 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) AT5G01810 175 / 6e-48 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT4G14580 173 / 4e-47 CIPK4, SnRK3.3 SNF1-RELATED PROTEIN KINASE 3.3, CBL-interacting protein kinase 4 (.1) AT5G10930 173 / 4e-47 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021493 [exp] 1369 / 0 AT2G37840 848 / 0.0 Protein kinase superfamily protein (.1.2) Lus10030182 [exp] 368 / 1e-117 AT3G61960 617 / 0.0 Protein kinase superfamily protein (.1.2) Lus10005135 [exp] 367 / 1e-117 AT3G61960 632 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033518 [exp] 290 / 3e-92 AT1G49180 353 / 2e-121 protein kinase family protein (.1.2) Lus10020855 [exp] 246 / 2e-73 AT1G49180 333 / 2e-111 protein kinase family protein (.1.2) Lus10025245 [exp] 190 / 3e-53 AT5G01820 504 / 1e-177 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1) Lus10009103 [exp] 187 / 6e-52 AT2G30360 501 / 1e-176 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Lus10021852 [exp] 184 / 7e-51 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10007448 [exp] 181 / 1e-49 AT5G25110 650 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G092900 [exp] 1022 / 0 AT2G37840 874 / 0.0 Protein kinase superfamily protein (.1.2) Potri.016G104900 [exp] 1005 / 0 AT2G37840 850 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G107000 [exp] 361 / 5e-115 AT3G61960 652 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G181000 [exp] 347 / 2e-109 AT3G61960 592 / 0.0 Protein kinase superfamily protein (.1.2) Potri.019G007200 [exp] 286 / 3e-91 AT1G49180 353 / 1e-121 protein kinase family protein (.1.2) Potri.019G011600 [exp] 285 / 3e-90 AT1G49180 352 / 9e-121 protein kinase family protein (.1.2) Potri.019G011300 [exp] 260 / 2e-81 AT1G49180 331 / 2e-113 protein kinase family protein (.1.2) Potri.006G263500 [exp] 180 / 2e-49 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.016G133900 [exp] 179 / 3e-49 AT5G01820 490 / 2e-172 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1) Potri.018G108500 [exp] 178 / 7e-49 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10022593 pacid=23178649 polypeptide=Lus10022593 locus=Lus10022593.g ID=Lus10022593.BGIv1.0 annot-version=v1.0 ATGGCTCAGGGGATGGGAAGAGGAGGGAGAGTTGTAGGGGATTACATGGTCGGCCGGCAAATCGGGTCGGGTTCTTTTTCGGTGGTCTGGCATGCTAGGC ACCGGGTGCACGGGACGGAGGTGGCGATAAAGGAGATCGTTACTGGTAGACTTAATAAGAAGTTGCAGGACAGTCTCATGTCCGAGATCTTCATCTTGAA GCGGATTAATCATCCCAACATTATCCGCCTTCACGACATTATTGAGGTTCCTGGTAGAATACATATTGTGTTGGAGTACTGCAAAGGGGGCGATCTTTCC ATGTATATTCATCGCCATGGAAGAGTACCAGAAGCACTTGCTAAGCATTTTATGCAGCAATTAGCTGCTGGCTTGCAAATTCTCCGGGATAATAATCTCA TACACAGGGATCTAAAACCACAGAATCTCCTGCTGACCACTAATGACAACAATGCCGTACTGAAAATTGCAGATTTTGGGTTTGCCAGATCTCTTCAACC TAGAGGTCTTGCTGAAACCTTGTGTGGTTCACCCCTTTACATGGCTCCAGAAATAATGCAACTGCAGAAGTATGATGCAAAGATGGACACACAGGCAGAT CTCTGGAGCGTCGGTGCCATTTTATTCCAACTTGTGACTGCAAAGACCCCATTTACTGGGAGCAATCAAATACAGTTGCTCCAGAACATCATGAAATCAA CTGACTTGCAATTTCCACCAAATGTTAATGAGTTGAGTCCCGAGTGCAGAGATTTATGCCAGAAATTGCTGCGGCGAAATCCAGTGGAACGGTTAACTTT TGAGGAGTTCTTTAACCACCCTTTTCTTTCTCAAAGGGGAGTGGATGATTCACTGAGGAGTCAGAGACCTTCACGATCAGGAGATGGCTTTTCTTCCTCT GGAAACATTTCCGTGGAGAAGGACACTCCACAGGAAGATTGTCTTCCATTTCTTCTGGAAGATGACTCTAGTGGTCCTGAGGGAAGTCCTTCTTTCTCTA CTAGGAAGCCACCATCCATGAAGACCACTTATGGATTCTCTCTAGATACTAGATCTGATGGAAGGGATTCAGCATCTAATGCTCTAAGTGGTGTCGGTAT TACCTCAAGACATACTTCTGTCAGACGCCAGCCTGGAAATTCTATTGCTAGGCCTACCATCACTAAAATTTTGAATGAAAATCAAAGTGAAACACCAAAG ACTACAGACCCTAAGCCAGCGAGCATCATAACAAGAGTCATTGATTCTATGGAGTTGATTGATCAAGATTATGTTTTGGTTTCTGGACCTCCTTTGGATT TATCTTCTTCGTTGGCAAGTAATTCGAAGACAAGTCACATACCATTTAAATCTGAGAGTGCCCCAGTAGCATCTGGCCATTTGATACCTACACAAAGCGT CCCTATGCCCATAGTTGGAGCTGGTAGTCCTACTCTTGCCCGTATTGCAAGCATGGATAGTCCAGGCTCTGCTCCTGGTACATCTCAAGGATCTACAGAT ATAGGAGATGCTATGGAGCATCCATCAAGTGACTGCATGACCAGGATCAAGTCTCTGCAGCAATGTACCTCTACAATAACAGAACTCATCCAAGAAAAGG TTGATGCGGGTAGACATTTGGAAGCATTCTCTATCCAACTTGTCATCCTTGCAATTTGGAAGCAAGCCCTGCATATTTGCCATGCTCAAGCTGCATCAGC AATTGAAGGAAGTCCAAGCCAGGAAACCATAAGACTACGGAGAAGCAACAGTAAGAAACACAGTACATCAGACGGAGAATGTTATTCTGATTATATTGGA CCAGAGGTGATCACCACTCAAATAGAGAAAGAATTTCTCCGGGAGGTTGAACATGCTGAGGAGCTTGCTAATGCTATCGAACCTGGTAGTACAGAGATGC CAGATGCTCTGGAGACTATTTTTCAATCTGCTCTAGCACTAGGAAGAAATGGAGGGGTAGATGAACTCATGGGGGATATGGAAAGCGCAACTTTGTTATA CTCGAAAGCAGTTAGGTTGCTGGTATTCCTTCTAGTGGAAGCACCTTCCCTAATTCTGAACCCACCATTTTCTCTCACGAACTCGGACCGGTATAGGCTC CGCAACTATATCGACATCCTTAACAATCGGCAGGGATATTCTCGGTCCCAAAGGATGGCGCTTCTGAAATGCGAGGACCAGTAG
AA sequence Show only first row Show all	>Lus10022593 pacid=23178649 polypeptide=Lus10022593 locus=Lus10022593.g ID=Lus10022593.BGIv1.0 annot-version=v1.0 MAQGMGRGGRVVGDYMVGRQIGSGSFSVVWHARHRVHGTEVAIKEIVTGRLNKKLQDSLMSEIFILKRINHPNIIRLHDIIEVPGRIHIVLEYCKGGDLS MYIHRHGRVPEALAKHFMQQLAAGLQILRDNNLIHRDLKPQNLLLTTNDNNAVLKIADFGFARSLQPRGLAETLCGSPLYMAPEIMQLQKYDAKMDTQAD LWSVGAILFQLVTAKTPFTGSNQIQLLQNIMKSTDLQFPPNVNELSPECRDLCQKLLRRNPVERLTFEEFFNHPFLSQRGVDDSLRSQRPSRSGDGFSSS GNISVEKDTPQEDCLPFLLEDDSSGPEGSPSFSTRKPPSMKTTYGFSLDTRSDGRDSASNALSGVGITSRHTSVRRQPGNSIARPTITKILNENQSETPK TTDPKPASIITRVIDSMELIDQDYVLVSGPPLDLSSSLASNSKTSHIPFKSESAPVASGHLIPTQSVPMPIVGAGSPTLARIASMDSPGSAPGTSQGSTD IGDAMEHPSSDCMTRIKSLQQCTSTITELIQEKVDAGRHLEAFSIQLVILAIWKQALHICHAQAASAIEGSPSQETIRLRRSNSKKHSTSDGECYSDYIG PEVITTQIEKEFLREVEHAEELANAIEPGSTEMPDALETIFQSALALGRNGGVDELMGDMESATLLYSKAVRLLVFLLVEAPSLILNPPFSLTNSDRYRL RNYIDILNNRQGYSRSQRMALLKCEDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37840			Protein kinase superfamily pro...		Lus10022593 [exp]	0	1
AT2G44140			Peptidase family C54 protein (...		Lus10025609 [exp]	5.1	0.9179
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10002917 [exp]	6.9	0.8991
AT2G21120			Protein of unknown function (D...		Lus10010893 [exp]	7.2	0.8977
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10017199 [exp]	7.5	0.8852
AT3G17810		PYD1	pyrimidine 1 (.1)		Lus10041990 [exp]	7.7	0.8818
AT1G73280		SCPL3	serine carboxypeptidase-like 3...		Lus10018667 [exp]	9.6	0.9043
AT2G21120			Protein of unknown function (D...		Lus10012716 [exp]	14.1	0.8954
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10004558 [exp]	15.0	0.8595
AT5G08130	bHLH	BIM1, bHLH046	basic helix-loop-helix (bHLH) ...		Lus10007974 [exp]	17.7	0.8849
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Lus10041720 [exp]	17.8	0.8466

Compare expression of checked genes

Lus10022593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.