Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18650 49 / 2e-07 MADS AGL103 AGAMOUS-like 103 (.1) AT4G11250 49 / 4e-07 MADS AGL52 AGAMOUS-like 52 (.1) AT5G41200 48 / 7e-07 MADS AGL75 AGAMOUS-like 75 (.1) AT4G02235 47 / 9e-07 MADS AGL51 AGAMOUS-like 51 (.1) AT5G65330 47 / 1e-06 MADS AGL78 AGAMOUS-like 78 (.1) AT5G38740 47 / 1e-06 MADS AGL77 AGAMOUS-like 77 (.1) AT5G40120 47 / 1e-06 MADS AGL76 AGAMOUS-like 76 (.1) AT5G40220 46 / 4e-06 MADS AGL43 AGAMOUS-like 43 (.1) AT5G39810 45 / 4e-06 MADS AGL98 AGAMOUS-like 98 (.1) AT5G39750 45 / 4e-06 MADS AGL81, EMB3008 EMBRYO DEFECTIVE 3008, AGAMOUS-like 81 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021494 [exp] 238 / 2e-81 AT3G18650 65 / 8e-13 AGAMOUS-like 103 (.1) Lus10024347 [exp] 118 / 6e-34 AT3G18650 63 / 8e-12 AGAMOUS-like 103 (.1) Lus10012656 [exp] 79 / 7e-20 AT3G18650 59 / 9e-12 AGAMOUS-like 103 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G238900 [exp] 58 / 1e-10 AT3G18650 66 / 1e-12 AGAMOUS-like 103 (.1) Potri.008G020300 [exp] 52 / 1e-08 AT3G18650 75 / 3e-15 AGAMOUS-like 103 (.1) Potri.004G222200 [exp] 52 / 2e-08 AT5G41200 65 / 5e-12 AGAMOUS-like 75 (.1) Potri.015G077800 [exp] 45 / 4e-06 AT4G02235 45 / 7e-06 AGAMOUS-like 51 (.1) Potri.007G120002 [exp] 40 / 0.0001 AT1G77980 97 / 1e-25 AGAMOUS-like 66 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10022594 pacid=23178601 polypeptide=Lus10022594 locus=Lus10022594.g ID=Lus10022594.BGIv1.0 annot-version=v1.0 ATGTTTCCAACGCTATCTCTGAAGAAGAGGAGAAGAACCCTGAAGAAGAAAGCAGAGGAGCTCTCAACCCTCTGCGGCATTGACGTTGCTTACGTATGCT TCGAACCCAACGGCAGAGTCGATACCTGGCCGGAGGACCCTATCAAGGTTAAAGACATCATTCTCAAGTATAACGTGCTCAAATCCAACCATACCCTTTC TTCATCTTCCGCTGCCTCTTCTTCTGGCACAACCCATAACGACATCGGCGGTCGGGATATTGGAGAGTTAGAAAGTTTGAGACTTCGAATCAACGAATTT TCCCAGGAGGAGTTGGCTGAGGTGCTTAAATTGGCAGACCGGAAGTTGGAGAGGTTGAGAGAAGAAATTGCGAGTTTGGAGAGCAACGGGGAAACCTCGA CGAGAAAGCGGCTAGCAGGCGGCGAGTTGAAGACGGCCAATTTCATAGATTTGGTGGGTTTGTCAACGGAAACAGGGCAAAAGGCCTAA
AA sequence Show only first row Show all	>Lus10022594 pacid=23178601 polypeptide=Lus10022594 locus=Lus10022594.g ID=Lus10022594.BGIv1.0 annot-version=v1.0 MFPTLSLKKRRRTLKKKAEELSTLCGIDVAYVCFEPNGRVDTWPEDPIKVKDIILKYNVLKSNHTLSSSSAASSSGTTHNDIGGRDIGELESLRLRINEF SQEELAEVLKLADRKLERLREEIASLESNGETSTRKRLAGGELKTANFIDLVGLSTETGQKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18650	MADS	AGL103	AGAMOUS-like 103 (.1)		Lus10022594 [exp]	0	1
AT1G13510			Protein of unknown function (D...		Lus10031915 [exp]	6.1	0.6160
AT5G25280			serine-rich protein-related (....		Lus10006660 [exp]	16.9	0.6008
AT4G25720		ATQC, QCT	GLUTAMINYL CYCLOTRANSFERASE, A...		Lus10038844 [exp]	32.1	0.5854
AT4G36500			unknown protein		Lus10025997 [exp]	39.3	0.5917
AT1G73440			calmodulin-related (.1)		Lus10009280 [exp]	49.3	0.5660
AT1G04260		PRA1.D, MPIP7, ...	PRENYLATED RAB ACCEPTOR 1.D, C...		Lus10042216 [exp]	50.3	0.5787
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10016598 [exp]	57.8	0.5591
AT2G39570		ACR9	ACT domain repeats 9, ACT doma...		Lus10001702 [exp]	62.0	0.5199
AT1G69210			Uncharacterised protein family...		Lus10014566 [exp]	77.9	0.5349
AT5G65550			UDP-Glycosyltransferase superf...		Lus10026410 [exp]	81.2	0.5233

Compare expression of checked genes

Lus10022594 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.