Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37880 114 / 9e-31 Protein of unknown function, DUF617 (.1) AT1G76610 99 / 4e-25 Protein of unknown function, DUF617 (.1) AT1G21050 97 / 2e-24 Protein of unknown function, DUF617 (.1) AT5G65340 81 / 3e-18 Protein of unknown function, DUF617 (.1) AT3G25640 78 / 6e-17 Protein of unknown function, DUF617 (.1) AT5G06990 77 / 8e-17 Protein of unknown function, DUF617 (.1) AT2G21990 75 / 4e-16 Protein of unknown function, DUF617 (.1) AT5G42680 74 / 7e-16 Protein of unknown function, DUF617 (.1.2) AT5G23100 74 / 2e-15 Protein of unknown function, DUF617 (.1) AT4G39610 74 / 2e-15 Protein of unknown function, DUF617 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000863 [exp] 86 / 9e-20 AT5G23100 276 / 3e-93 Protein of unknown function, DUF617 (.1) Lus10027241 [exp] 85 / 1e-19 AT5G23100 270 / 1e-90 Protein of unknown function, DUF617 (.1) Lus10038951 [exp] 80 / 6e-19 AT5G23100 159 / 1e-49 Protein of unknown function, DUF617 (.1) Lus10019166 [exp] 80 / 2e-17 AT3G25640 258 / 2e-86 Protein of unknown function, DUF617 (.1) Lus10008672 [exp] 78 / 2e-17 AT5G06990 162 / 5e-54 Protein of unknown function, DUF617 (.1) Lus10036630 [exp] 79 / 4e-17 AT4G39610 308 / 5e-105 Protein of unknown function, DUF617 (.1) Lus10035847 [exp] 79 / 5e-17 AT2G21990 306 / 1e-104 Protein of unknown function, DUF617 (.1) Lus10009615 [exp] 77 / 2e-16 AT5G23100 258 / 4e-86 Protein of unknown function, DUF617 (.1) Lus10034386 [exp] 77 / 2e-16 AT3G25640 268 / 3e-90 Protein of unknown function, DUF617 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G091700 [exp] 130 / 2e-37 AT2G37880 217 / 2e-71 Protein of unknown function, DUF617 (.1) Potri.005G259300 [exp] 103 / 6e-27 AT1G21050 241 / 2e-80 Protein of unknown function, DUF617 (.1) Potri.002G002000 [exp] 99 / 4e-25 AT1G21050 236 / 1e-78 Protein of unknown function, DUF617 (.1) Potri.001G031900 [exp] 86 / 7e-20 AT5G06990 275 / 6e-93 Protein of unknown function, DUF617 (.1) Potri.003G193700 [exp] 84 / 3e-19 AT5G06990 328 / 6e-114 Protein of unknown function, DUF617 (.1) Potri.006G048800 [exp] 83 / 6e-19 AT2G41660 241 / 3e-79 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.010G131600 [exp] 81 / 4e-18 AT3G25640 249 / 1e-82 Protein of unknown function, DUF617 (.1) Potri.012G058300 [exp] 80 / 6e-18 AT5G23100 261 / 7e-88 Protein of unknown function, DUF617 (.1) Potri.008G114500 [exp] 79 / 2e-17 AT3G25640 228 / 2e-74 Protein of unknown function, DUF617 (.1) Potri.005G084000 [exp] 76 / 2e-16 AT2G21990 327 / 4e-114 Protein of unknown function, DUF617 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04759 [flax] [poplar] DUF617 Protein of unknown function, DUF617
Representative CDS sequence Show only first row Show all	>Lus10022595 pacid=23178544 polypeptide=Lus10022595 locus=Lus10022595.g ID=Lus10022595.BGIv1.0 annot-version=v1.0 ATGACCAAGATCGACGCCCTCCGTAGATTCCTCCTTCCCTGCCTCTCCCCTTCCACCACCGACCCCCCCCCCCCCCCCCCCCGCCAATACACGAATCAGC ACCGTAAGCGACGCCGTAACTTCAAAGAAAGAAGATCCCAAATCAGACCACCCAGATTCTTCCTCCTCCTCCTCTTCCACCGCCGCCAGCGTGGCTCCAT CCCGGCCGTCCAAAGCCATGGTGATCGGAACCATCTTCGGCACCCGTCGCGGCCACGTCTGGCTATGTTTCCAGCACGACCGCCTCTCCACCAAACCTTT GCTCCTCCTCGAGCTCTCAACTCCGACACACCAGCTCGTCGGAGAGATGAGATGCGGCCTCGTCCGGGTCGCACTCGAATGCACCCGACCCGAATTCCGA TCATGGCGGGTCCGCTCCCTGCCCGTCTGGAACGTGTCTGGAACGTCAACTGCAATGGGAAGAGGCTGGGGTTCGCCGCCAGGAGGAAGCCTACCGAGCA GAATCTGCAGATGCTCAAGACGATGCAGTCCATGACTGTGGGGGCGGGGGTAATCCCTGCCGGTGGCGGGTCGCCGGAGGAGATCATGTACATGAGGGCA AATTACGAGCATGTTGTTGGCAGCGCTGATTCGGAGTCGTTTCACCTTATTGATTCTATCCACGGAGAGTGCTGCGGTCAAGAACTGGGCGTCTTCTTAA TCAGGAGCTGCTGA
AA sequence Show only first row Show all	>Lus10022595 pacid=23178544 polypeptide=Lus10022595 locus=Lus10022595.g ID=Lus10022595.BGIv1.0 annot-version=v1.0 MTKIDALRRFLLPCLSPSTTDPPPPPPRQYTNQHRKRRRNFKERRSQIRPPRFFLLLLFHRRQRGSIPAVQSHGDRNHLRHPSRPRLAMFPARPPLHQTF APPRALNSDTPARRRDEMRPRPGRTRMHPTRIPIMAGPLPARLERVWNVNCNGKRLGFAARRKPTEQNLQMLKTMQSMTVGAGVIPAGGGSPEEIMYMRA NYEHVVGSADSESFHLIDSIHGECCGQELGVFLIRSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37880			Protein of unknown function, D...		Lus10022595 [exp]	0	1
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10004812 [exp]	2.8	0.8112
AT2G36895			unknown protein		Lus10001393 [exp]	3.5	0.7792
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10042874 [exp]	5.1	0.7991
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10000492 [exp]	7.9	0.6911
AT2G38840			Guanylate-binding family prote...		Lus10014720 [exp]	8.7	0.6987
AT5G58610			PHD finger transcription facto...		Lus10007741 [exp]	8.8	0.7211
AT2G43235			unknown protein		Lus10025487 [exp]	14.1	0.6678
AT1G02270			Calcium-binding endonuclease/e...		Lus10010095 [exp]	17.9	0.7023
AT5G04830			Nuclear transport factor 2 (NT...		Lus10008971 [exp]	18.7	0.7528
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10033954 [exp]	22.4	0.6785

Compare expression of checked genes

Lus10022595 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.