Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53940 426 / 3e-149 Mitochondrial substrate carrier family protein (.1) AT2G37890 398 / 5e-139 Mitochondrial substrate carrier family protein (.1) AT3G55640 387 / 1e-134 Mitochondrial substrate carrier family protein (.1) AT4G01100 172 / 1e-50 ADNT1 adenine nucleotide transporter 1 (.1.2) AT4G26180 157 / 7e-45 Mitochondrial substrate carrier family protein (.1) AT5G51050 154 / 3e-42 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT4G32400 148 / 4e-41 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT5G64970 144 / 4e-39 Mitochondrial substrate carrier family protein (.1) AT5G01500 144 / 4e-39 TAAC thylakoid ATP/ADP carrier (.1) AT5G61810 139 / 5e-38 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021497 [exp] 600 / 0 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10024344 [exp] 415 / 6e-146 AT3G53940 417 / 4e-147 Mitochondrial substrate carrier family protein (.1) Lus10004689 [exp] 395 / 2e-137 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10012658 [exp] 332 / 1e-113 AT3G53940 327 / 5e-112 Mitochondrial substrate carrier family protein (.1) Lus10040257 [exp] 282 / 8e-94 AT3G55640 358 / 2e-124 Mitochondrial substrate carrier family protein (.1) Lus10033948 [exp] 177 / 2e-52 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033947 [exp] 177 / 3e-52 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032365 [exp] 177 / 3e-52 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 167 / 8e-49 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G091900 [exp] 468 / 2e-166 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.016G103300 [exp] 465 / 4e-165 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.008G060900 [exp] 406 / 3e-142 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.010G197400 [exp] 402 / 2e-140 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1) Potri.014G095400 [exp] 185 / 2e-55 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.001G094100 [exp] 178 / 8e-53 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 178 / 1e-52 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 177 / 1e-52 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.006G226300 [exp] 152 / 8e-43 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1) Potri.012G110700 [exp] 154 / 3e-42 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10022597 pacid=23178597 polypeptide=Lus10022597 locus=Lus10022597.g ID=Lus10022597.BGIv1.0 annot-version=v1.0 ATGGATGCTAGGGTCGGTATGGTTGTTGAGGGAGGAGGGCAACGAGCCCTCCATTCGGCCGCCGCCGCCGCAGCTCATGGAACGGTGGTCGATGCCGGTG CCCGCAAGTTCCTTCAGCAGCAGGGTCAAACTCACAGTAAACCGCCTCCGCCGCAGCCTTCTTCTTTCACTCAGCAGCAGGCCCCGCTTGGAAGCGTGCA GCACATGCTGGCCGGTGGGGTGGCCGGAGCCTTTAGCAAAACCTGCACTGCTCCAATGGGTCGACTTACAATCCTCTTCCAGATTCAGGGGATGTACTCT GATGTCACAGCATTGAGCAGGCCTTGTGTCTGGCGAGAAGCTTGTCGTATTTTTAACGAAGAAGGGTTTAGAGCATTTTGGAGAGGCAATCTTGTCACCG TCGTTCACCGTGTTCCATACTCTGCAGTCAACTTTTATGCCTACGAAAAATACAAGACTTTTTTGCAGTCAGTTTTTGGACTAGAAAGACAAGGGGGGAA TTCAACTGCAGACTTAGCTGTCCGTTTTCTAGGTGGAGGTTTGGCTGGGATATCAGCTGCCTCGGCCACATATCCCTTGGATCTTGTGAGGACACGTCTT GCCGCACAGAGAGACACAATCTACTATCGAGGTATCTGGGGTTCCTTCCGTACCATATGCAAAGAGGAAGGATACTTGGGGTTATATAAAGGAGTTGGGC CTACTTTATTGAGTGTTGGACCAAATCTAGCCATAGGATTCTGTGTATACGAGTCTCTTAAATCATTTTGGGAATCTCAAAGGCCAAACGATTCCACCAC CACGGTCAGTCTTAGTTGCGGCAGCCTTTCTGGAATTGCTTCGTCAACTGCGACATTTCCCATTGATCTTGTACGGAGAAGAATGCAGTTAGAAGGTGCT GGCGGTAAAGCCCGCGTGTACACAGGGGGTTTGCTTGGGACATTTCAGCATATAATCAAGAATGAAGGCCTGCTAGGCTTGTACAGGGGCATCCTTCCTG AATACTATAAGGTGGTCCCTGGTGTTGCCATCGTCTTCATGACCTATGAGACATTAAATATAGCTCTGTCTGGTTCTCCCTCCTAG
AA sequence Show only first row Show all	>Lus10022597 pacid=23178597 polypeptide=Lus10022597 locus=Lus10022597.g ID=Lus10022597.BGIv1.0 annot-version=v1.0 MDARVGMVVEGGGQRALHSAAAAAAHGTVVDAGARKFLQQQGQTHSKPPPPQPSSFTQQQAPLGSVQHMLAGGVAGAFSKTCTAPMGRLTILFQIQGMYS DVTALSRPCVWREACRIFNEEGFRAFWRGNLVTVVHRVPYSAVNFYAYEKYKTFLQSVFGLERQGGNSTADLAVRFLGGGLAGISAASATYPLDLVRTRL AAQRDTIYYRGIWGSFRTICKEEGYLGLYKGVGPTLLSVGPNLAIGFCVYESLKSFWESQRPNDSTTTVSLSCGSLSGIASSTATFPIDLVRRRMQLEGA GGKARVYTGGLLGTFQHIIKNEGLLGLYRGILPEYYKVVPGVAIVFMTYETLNIALSGSPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53940			Mitochondrial substrate carrie...		Lus10022597 [exp]	0	1
AT3G53940			Mitochondrial substrate carrie...		Lus10021497 [exp]	2.8	0.9131
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10016103 [exp]	5.3	0.9201
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Lus10034064 [exp]	6.0	0.9197
AT1G02060			Tetratricopeptide repeat (TPR)...		Lus10017658 [exp]	8.3	0.9197
AT1G36990			unknown protein		Lus10029655 [exp]	10.6	0.9097
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10007236 [exp]	11.0	0.8984
AT5G46920			Intron maturase, type II famil...		Lus10003020 [exp]	11.4	0.9049
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10042329 [exp]	12.0	0.9117
AT4G21520			Transducin/WD40 repeat-like su...		Lus10018434 [exp]	13.4	0.8798
AT3G14120			unknown protein		Lus10015675 [exp]	15.5	0.9086

Compare expression of checked genes

Lus10022597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.