Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27990 249 / 2e-74 HD PNF, BLH8 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) AT4G34610 220 / 6e-64 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT2G16400 217 / 2e-63 HD BLH7 BEL1-like homeodomain 7 (.1) AT4G36870 221 / 1e-62 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT1G75410 212 / 3e-61 HD BLH3 BEL1-like homeodomain 3 (.1.2) AT2G23760 214 / 4e-61 HD BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3) AT1G19700 212 / 7e-61 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT2G27220 204 / 4e-59 HD BLH5 BEL1-like homeodomain 5 (.1.2) AT2G35940 207 / 3e-58 HD BLH1, EDA29 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) AT5G41410 194 / 5e-54 HD BEL1 BELL 1, POX (plant homeobox) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021498 [exp] 896 / 0 AT5G02030 339 / 6e-109 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Lus10004688 [exp] 239 / 1e-72 AT5G02030 209 / 9e-62 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Lus10021452 [exp] 238 / 2e-71 AT2G27990 282 / 7e-89 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Lus10040256 [exp] 236 / 2e-71 AT2G27990 204 / 3e-60 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Lus10016110 [exp] 236 / 1e-70 AT2G27990 282 / 1e-88 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Lus10004201 [exp] 226 / 5e-65 AT2G35940 504 / 1e-170 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10029405 [exp] 224 / 3e-64 AT2G35940 478 / 9e-161 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10017481 [exp] 219 / 2e-62 AT4G34610 424 / 1e-141 BEL1-like homeodomain 6 (.1.2) Lus10000184 [exp] 218 / 4e-62 AT4G34610 447 / 7e-151 BEL1-like homeodomain 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G061000 [exp] 260 / 1e-79 AT5G02030 235 / 9e-71 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Potri.010G197300 [exp] 256 / 4e-78 AT5G02030 241 / 4e-73 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Potri.009G009800 [exp] 262 / 3e-77 AT2G27990 280 / 5e-84 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Potri.009G009900 [exp] 259 / 2e-76 AT2G27990 262 / 2e-77 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Potri.004G213300 [exp] 257 / 2e-75 AT2G27990 253 / 3e-74 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) Potri.006G203000 [exp] 239 / 1e-69 AT2G35940 491 / 9e-166 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.016G069700 [exp] 236 / 9e-69 AT2G35940 501 / 1e-169 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.009G017400 [exp] 232 / 9e-67 AT2G35940 310 / 4e-95 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.004G159300 [exp] 229 / 4e-66 AT4G34610 416 / 2e-138 BEL1-like homeodomain 6 (.1.2) Potri.001G216600 [exp] 229 / 7e-66 AT2G35940 377 / 7e-121 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07526 [flax] [poplar] POX Associated with HOX CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10022599 pacid=23178619 polypeptide=Lus10022599 locus=Lus10022599.g ID=Lus10022599.BGIv1.0 annot-version=v1.0 ATGGCGGAAGGTTACGAGGCCTACCATGTCCCACAACAAAGCAGAAGAGATAAGCTCAGAGATCAGCTTCTTCATCATCATCATCATCATCTTGTGGCTC ACAATCAAGATAACAACAACGCCGCCCACCTCCTTCATCCTCCTCTTCCTCCTCCTCTCTATGATGCACCTTCATCATCAGATTTCCTCCCGAAACACCA CTCCTCCAATTTCACTGGATTCATCAGTCCCAACTACATGGACTCCGCCAATTCCTCCAACCTCCCAACCTTAAACCCTACCGACACTAGTATCCACTCC CAATCCCCAAACCCCTTCCTCAATTTCCACCCTTCCCCTGCCACCGGAGCTCTACTCTTCAAGCCTGAGCCCCTTTCTCTCTCCTTATCTACTTCCCACC ACAACCAACAACACCAACACCAACAGCAGCAGCACCACAACGGTCTCAATTTCCAGAGCTACGTCCTCCCGACCACCGGCATTAATGTCGCCGGAGGAGG AGACGCTGTCGCTTCCAGATGCTCTGTCGACGTCCTCCCGCTCGGCCCTTTCACCGGCTACGCCTCCGTACTTAAAGGATCCAGGTTCCTCAACCCTGCT CAGCAGCTTCTCGAGGAGTTCTGTGACGTTGTCGGCGGCGGAATACTGATCCCCGCCGGGGAAAAGATTGCCCCCGACCCTTCTTTACTCGATCCGCCGC TTGACGACGTCGATCCCCTTTCATATGGGTCGTCGGAATTCGGAGCTGAATCCCGCAGGAAAAAGTCCCGGCTGATTTCCATGCTTGACGAGGTATACAG GAGGTACAAGCAATACTACCAGCAGATGGAAGCAGTAGTCACATCCTTTGAATGCGTGGCTGGACTTGGGAACGCTGCTCCCTATGCGAACCTGGCTCTG AAAGCCATGTCCAAGCACTTTCGGTCCTTGAAGAATGCCATCACTGACCAGCTCTCCAAAGCTTCTTTAGGCAAAGATGATCATGCTCTTGCCTCCAGTA CTGTGAAACTCGGTAGCTATGGCATCACTAGGCATAATGGTCAGAGTTCAGGACTCATCGAACATCACCAGCCAGTTTGGCGGCCTCAAAGGGGACTCCC TGAACGTGCCGTCACCGTCCTTCGAGCATGGCTCTTTGAACACTTCCTGCATCCGTACCCGACCGATACCGACAAGCTAATGCTGGCGAAACAGACGGGT CTTTCACGAAGTCAGGTATCGAATTGGTTCATCAATGCGAGAGTTAGGCTATGGAAGCCAATGGTGGAAGAGATACACACGTTGGAGACCCGACAGGCAA AGAAGGCTGCCCATAAAGATGATCATCAGCGTAACAAGGCGACTACTACAGATCATCACCAGCAACCACCCTACTCGAATTCTGATGCCGCCGCCGGGGG AAGCAACCCTTCAACATCATCTCAACCAGCGTTCGACGTGCCGATACCAAAGCGGACACGAAACGAACTACCTCCATCTGATCACATGTCAGTTGGGAGC AACGAGGACCACCAGCAACACCAGCATCAACATCAACAGCTGTATAATAATACTAGTAATAATAACATGCAGTCTTATGGCGGCGAGGGGTTTTCAGATG GCCATTTGGGAATGGAAGCTGGTGGTGGTGGAGTAGTGGGAGGTGTGTCGTTGACGCTTGGTCTTCACCAACACCACCACCAAGGGATAGGGTTTTTGGA ACCACCGCCCTTCTCTATAACATCTGTGGCGGCGCAGCGGTTTGGTTTGGATACCGGCGGGGTTAGTGAAGGGTATAATGTGATGGGTGGTGGTAGTGGT TTCGATTCTCCACAGAACAGAAATTTTGGACGAGACGTCATGGGTGGTCAACTCTTGCATGATTTCGTCGGCTGA
AA sequence Show only first row Show all	>Lus10022599 pacid=23178619 polypeptide=Lus10022599 locus=Lus10022599.g ID=Lus10022599.BGIv1.0 annot-version=v1.0 MAEGYEAYHVPQQSRRDKLRDQLLHHHHHHLVAHNQDNNNAAHLLHPPLPPPLYDAPSSSDFLPKHHSSNFTGFISPNYMDSANSSNLPTLNPTDTSIHS QSPNPFLNFHPSPATGALLFKPEPLSLSLSTSHHNQQHQHQQQQHHNGLNFQSYVLPTTGINVAGGGDAVASRCSVDVLPLGPFTGYASVLKGSRFLNPA QQLLEEFCDVVGGGILIPAGEKIAPDPSLLDPPLDDVDPLSYGSSEFGAESRRKKSRLISMLDEVYRRYKQYYQQMEAVVTSFECVAGLGNAAPYANLAL KAMSKHFRSLKNAITDQLSKASLGKDDHALASSTVKLGSYGITRHNGQSSGLIEHHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKLMLAKQTG LSRSQVSNWFINARVRLWKPMVEEIHTLETRQAKKAAHKDDHQRNKATTTDHHQQPPYSNSDAAAGGSNPSTSSQPAFDVPIPKRTRNELPPSDHMSVGS NEDHQQHQHQHQQLYNNTSNNNMQSYGGEGFSDGHLGMEAGGGGVVGGVSLTLGLHQHHHQGIGFLEPPPFSITSVAAQRFGLDTGGVSEGYNVMGGGSG FDSPQNRNFGRDVMGGQLLHDFVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10022599 [exp]	0	1
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10021498 [exp]	1.0	0.9649
AT1G76660			unknown protein		Lus10025171 [exp]	2.4	0.9055
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10007774 [exp]	3.5	0.8996
AT2G33855			unknown protein		Lus10015404 [exp]	5.7	0.9044
AT1G55110	C2H2ZnF	ARABIDOPSISTHAL...	indeterminate(ID)-domain 7 (.1...		Lus10029904 [exp]	5.9	0.8982
AT5G23060		CaS	calcium sensing receptor (.1)		Lus10009609 [exp]	6.3	0.9079
AT4G39110			Malectin/receptor-like protein...		Lus10017478 [exp]	7.5	0.8846
AT2G46940			unknown protein		Lus10010083 [exp]	8.9	0.8637
AT5G52450			MATE efflux family protein (.1...		Lus10029668 [exp]	9.2	0.9015
AT2G33855			unknown protein		Lus10013983 [exp]	16.0	0.8950

Compare expression of checked genes

Lus10022599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.