Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54010 831 / 0 DEI1, PAS1 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) AT5G48570 197 / 4e-55 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G25230 192 / 1e-53 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT3G21640 81 / 5e-16 FKBP42, UCU2, TWD1, ATFKBP42 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G42580 82 / 6e-16 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT3G58620 79 / 4e-15 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT1G58450 63 / 2e-11 TPR6 tetratricopeptide repeat 6, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G55520 61 / 1e-10 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G30480 61 / 7e-10 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT2G15790 61 / 1e-09 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021502 [exp] 1143 / 0 AT3G54010 847 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10003171 [exp] 199 / 8e-55 AT3G25230 871 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10025888 [exp] 188 / 6e-52 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10002338 [exp] 190 / 3e-51 AT3G25230 874 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10038216 [exp] 183 / 4e-50 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10029505 [exp] 72 / 2e-13 AT3G21640 409 / 5e-144 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10042854 [exp] 72 / 8e-13 AT1G53300 749 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10028154 [exp] 71 / 2e-12 AT1G53300 754 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10022500 [exp] 70 / 4e-12 AT5G65160 652 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G105100 [exp] 947 / 0 AT3G54010 825 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Potri.006G033400 [exp] 206 / 7e-59 AT5G48570 596 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G248300 [exp] 200 / 3e-56 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.002G117200 [exp] 176 / 1e-47 AT5G48570 553 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.014G149400 [exp] 173 / 3e-46 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G059200 [exp] 74 / 8e-14 AT3G21640 548 / 0.0 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G264400 [exp] 73 / 1e-13 AT3G21640 556 / 0.0 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.006G178900 [exp] 68 / 2e-12 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.008G057900 [exp] 67 / 2e-12 AT3G55520 236 / 7e-80 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.018G100700 [exp] 67 / 4e-12 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10022603 pacid=23178650 polypeptide=Lus10022603 locus=Lus10022603.g ID=Lus10022603.BGIv1.0 annot-version=v1.0 ATGGAAGGTGCGGCGCAGGAATATGCCCCGCAGCAGAAGAAAAAGGAACCCACTGAGCTTGAGAAGAGGAGAAAGAAAATTCAACCTGGAAGCTTAATGA AGGCTGAAATCAGGCCTGGGGGTGGTGATATTAGACCAACTGAGGGTGATCAGGTCATATATCATTGTACTGTCAGAACGTTGGATGGAGTAGTTGTGGA GTCGACTAGGTCGGATAATGGGGGGAAGGGTATTCCATTGAGACATGTTGTGGGGAAAAGCAAAATGCTGTTAGGAGTCGTTGAAGGACTTACCACGATG TTGAAGGGGGAAGTTGCAATGTTTAAAATGAAGCCTTCAATGCACTATGGCGAGGCTGATTGTCCAATCTCGCCGCCAAGTGGATTCCCAAAGGAGGATG AACTTCACTATGAGATCGAAATGATCGAGTTCTCAAAAGTGAAGGTAGTCACTGATGATTTGGGAGTCCTAAAGAAGGTCATCGAGGACGGCCAAGGTTG GGAGTGTCCTAGGGAACCGTACGAAGTAAAAGCCTGGATTTCAGCAAAGACGAGTGACGGGAAACTAATTTTAGCCCGCACAGAAGGAGAGCCATATTTC TTTACCTTCGGGAAATCTGAGGTCCCCAAAGGTCTTGAGATGGGAATGGGAACAATGGCACGAGAGGAAAAGGCTGTAATATTTGTTACTGGTGAATACT TAACAGACTCTCCCCTCCTATCCACAGTAGAAGGTCTGGATGAAGTTCAATTCGAGGTGGAGCTTGTTCATTTCATTCAGGTGAGAGACATGCTGGGAGA TGGACGCCTAATAAAGCGTAGAATTCGTGATGGGAAGGGAGAATTCCCCATGGATTGCCCACTTCACGACAGTCTATTACGTGTTCATTACAAGGCCATG CTTCTAAATGATGAAAATACTGTTTTTTACGATACAAGAGCTGATAATGATGGACAACCTTTGGAGTTCAGTTCTGGAGAAGGGCTTGTGCCTGAAGGAT TTGAAATGTCTGTCCGTCTAATGCTTCCTGGAGAGCTAGCACTTGTTACATGTCCTCCTGATTATGCATATGACAAGTTTGAAAGTGCGACTTATTTGAC TGCTTCTTCTACACTTGTGATCAGGCCAGTTAATGTCCCAGAAGGTGCTCATGTCCAGTGGGAAATTGAGCTTCTTGGTTTTGAGATGCCAAAGGGAAAC AGGCTGTTCAAAGAAGGAAAGTTTGTCCTTGCTAAAGCAAAGTACGATAAGGTACTGAGGGAGTTTAACCATGTGAATCCGCAAGATGACGAGGAAGGGA AGGTTTTTTCGAACACGAGGAATGTTTTATACTTAAATGTGGCTGCTTGCTACCTGAAAATGGGAGAGTGGAGGAAATCCATCGAGACGTGCAACAAGGT TATAGATGCAAGCCCTGGACATGCTAAAGCTCTATACCGCCGTGGGATGGCATACATGGAAGCCGGCGAATTCGAGGAAGCAAAGAAGGACTTTGAAATG ATGGCTAAAGTGGACAAGTCATCAGAGTCTGATTCGAAAGCTGCTCTTCACAAGCTGAGGCAAACGAAGCAGGAAGTTGAGAGGAAGGCACGCAAACAAT TCAAAGGACTTTTCGACAAGAAGCCAGGAGAAATTGCAGACGTTGCACCAGATGATAAAGCAAAGGACATGAAAGAAGAGAGCACATCTGAAAGCCACAA GGTTGAAGAGGAGGACAAGAACAGCTCAGATGAGATTGAGGAAGAGCCATTGCTCGAGGATGCAGCCGATCAGCCCAGACCGAGCTTGTTATCCCGCTTG TGGCCCGTAGGTGGCAGGTTGTTTTCGGCTCTGGGGCTCCAACGATGTACCATTTTGTAA
AA sequence Show only first row Show all	>Lus10022603 pacid=23178650 polypeptide=Lus10022603 locus=Lus10022603.g ID=Lus10022603.BGIv1.0 annot-version=v1.0 MEGAAQEYAPQQKKKEPTELEKRRKKIQPGSLMKAEIRPGGGDIRPTEGDQVIYHCTVRTLDGVVVESTRSDNGGKGIPLRHVVGKSKMLLGVVEGLTTM LKGEVAMFKMKPSMHYGEADCPISPPSGFPKEDELHYEIEMIEFSKVKVVTDDLGVLKKVIEDGQGWECPREPYEVKAWISAKTSDGKLILARTEGEPYF FTFGKSEVPKGLEMGMGTMAREEKAVIFVTGEYLTDSPLLSTVEGLDEVQFEVELVHFIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLRVHYKAM LLNDENTVFYDTRADNDGQPLEFSSGEGLVPEGFEMSVRLMLPGELALVTCPPDYAYDKFESATYLTASSTLVIRPVNVPEGAHVQWEIELLGFEMPKGN RLFKEGKFVLAKAKYDKVLREFNHVNPQDDEEGKVFSNTRNVLYLNVAACYLKMGEWRKSIETCNKVIDASPGHAKALYRRGMAYMEAGEFEEAKKDFEM MAKVDKSSESDSKAALHKLRQTKQEVERKARKQFKGLFDKKPGEIADVAPDDKAKDMKEESTSESHKVEEEDKNSSDEIEEEPLLEDAADQPRPSLLSRL WPVGGRLFSALGLQRCTIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Lus10022603 [exp]	0	1
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Lus10021502 [exp]	1.7	0.9362
AT4G02860			Phenazine biosynthesis PhzC/Ph...		Lus10003725 [exp]	3.0	0.9076
AT5G08630			DDT domain-containing protein ...		Lus10004282 [exp]	5.0	0.9060
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10033533 [exp]	6.0	0.9128
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10003183 [exp]	8.5	0.9076
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Lus10003115 [exp]	9.5	0.8835
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10023829 [exp]	11.0	0.8946
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10043228 [exp]	11.2	0.9011
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10032634 [exp]	17.6	0.8876
AT4G17486			PPPDE putative thiol peptidase...		Lus10033030 [exp]	18.2	0.8714

Compare expression of checked genes

Lus10022603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.