Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09920 1117 / 0 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT1G60890 714 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G10900 706 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT2G41210 587 / 0 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT3G56960 581 / 0 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT1G77740 464 / 2e-152 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT1G21980 462 / 7e-152 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT3G07960 439 / 2e-143 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT2G26420 430 / 4e-140 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT1G01460 260 / 8e-79 ATPIPK11 Phosphatidylinositol-4-phosphate 5-kinase, core (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021505 [exp] 1552 / 0 AT3G09920 1180 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10014408 [exp] 1326 / 0 AT3G09920 1228 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10023909 [exp] 1316 / 0 AT3G09920 1210 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10001377 [exp] 741 / 0 AT1G60890 1044 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10015456 [exp] 739 / 0 AT1G60890 1036 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10020821 [exp] 696 / 0 AT1G60890 935 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10012689 [exp] 693 / 0 AT1G60890 932 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10027306 [exp] 579 / 0 AT3G56960 1185 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10039011 [exp] 579 / 0 AT3G56960 1174 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G121200 [exp] 1243 / 0 AT3G09920 1230 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Potri.001G211200 [exp] 732 / 0 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.003G019100 [exp] 706 / 0 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.002G088100 [exp] 591 / 0 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.005G172800 [exp] 528 / 7e-177 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.004G139900 [exp] 456 / 1e-149 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.019G015768 [exp] 446 / 9e-146 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.001G027900 [exp] 439 / 2e-142 AT3G07960 1107 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.003G196000 [exp] 434 / 1e-140 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.016G036800 [exp] 432 / 5e-140 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01504 [flax] [poplar] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0251 [flax] [poplar] MORN PF02493 [flax] [poplar] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Lus10022606 pacid=23178593 polypeptide=Lus10022606 locus=Lus10022606.g ID=Lus10022606.BGIv1.0 annot-version=v1.0 ATGTCTGCTCAAGTGGCCATTGTTGGTGATGGGGAAAGAGGACCAACTTTAGCAGACAGAACAAAATCAGTTGATCTCATCTCTAGTAGAGATTTCTCTT ATCTTTCTGTCAACGGCGATGCAATTCCCAGGTTCTCTGATAGCCCTTCTTTCAGAACCGGGGAGCTCTTCCTTACCAATGGGGAATCCTATCTTGGTTC ACTGCTGGGGAATGTACCAGAAGGCAGAGGGAAATATGTGTGGTCAGCTGGATGTATATACGATGGTGAATGGAGATGTGGGATAAGAAATGGAACTGGG AGGATTCAGTGGCCCTCTGGAGCAGCTTACGAAGGAGAATTTTCAGGTGGTTATATGCACGGAAGTGGTAGCTACATCAGTGCCAATAAAATCAGTTACA GAGGAAGGTGGCGGTTGAATCTCAAGCATGGCTTGGGATACCAAGTTTATCCTAATAGGGATGTATTTGAAGGGTCATGGATACAAGGAACAGCTGAAGG GCCTGGAAAGTACACCTGGGCTAATGGCAATGTCTATATGGGGAACATGAAAGGAGGGAAGATGACAGGGAAAGGAACTCTAACTTGGGTAAATGGAGAC TCATTTGAAGGAAGTTGGCTAAATGGAATGATGCATGGAGTTGGAGCATACACCTGGAGGGATGGTGGCTGCTATGTTGGAACTTGGACTCATGGCTTGA AGGATGGAAAGGGATCTTTCTATCCAAGTGGGAGTCGATATTCGTCAGTACAAGAACGGTACCTCAATGCTTTGAGAAAAAGAGGACTACTCCCTGATAT GAGGAAGAACCATGCACATATTCATCACCATCCATCTTCAGTGGACATGGATCAACGGTCTCACCATCGTGATTCGTCTGAGAACGTGTCTCGAAGCAGG AATGTATCGCTGGAGAGACGTTGGAGCCTCGAGGTATCGATCGAGAAGGAGATTGCTCATGATTCGACATTGGTGGATTCGTCTGAAGTTAATGGAGCAG TGGTTCCACCTATCCTGGAAAGGGAATATATGCAGGGTGTTCTAATCAGTGAGATTGTTCTGAACGATACCTTTTCATCAATGTCTAGAAGGGCGAGACG GCGACAGAAGAAGCTTGTTAGAGAGATCAAACGGCCTGGTGAAACAATTCTCAAAGGGCATCGGAGTTATGACTTGATGCTCAGTTTGCAGCTTGGTATC AGGTATACTGTTGGGAAAATTACACCTGTACAAAGACGAGAAGTCCGAACATCAGATTTCGGTCCAAGGGCAAGCTTCTGGATGCAGTTCCCCAAGAATG GATCTCAGTTAACACCATCCCATCGTTCTGATGATTTCAAGTGGAAGGACTACTGTCCTATGGTCTTCAGGAATTTGAGGGAGATGTTCAAGATCGATGC TGCCGATTACATGATGTCCATATGTGGAAATGATGCTCTTAGGGAGCTCTCTTCTCCCGGGAAAAGTGGCAGCATTTTCTTCTTGTCTCAAGATGACCGT TTCATGATCAAGACACTCAGAAAGTCTGAAGTCAAGGTGCTTCTGAATATGCTTCCTGATTACCATCACCACGTGAGAACGTACGAAAACACGCTCATAA CAAAGTTCTTCGGCCTTCATAGGATCAAACCTTCAAGTGGTCAGAAGTTTCGCTTTGTAGTCATGGGGAACATGTTCTGCACAGAAGTGAGAATCCATCG ACGGTTCGATCTGAAAGGATCTTCGCTTGGCCGATCCACCGAGAAGATCGAAATCGACGAGAACACTACCCTCAAGGACTTGGACCTCAACTACAGCTTC TACTTGGAACCTTCCTGGCGAGAGTCTTTACTAAAGCAGATAGAGACAGACAGCAAATTCTTGGAAGCAAATCGAATAATGGATTACAGCCTTCTACTCG GCGTTCATTATCGAGCACCGCAGCACCTTCGACCAATAACGTTGTTGAATCGAAACGAAGGATTGGGTGTTCTTGCAGAGGAAGATACCATCGAAGACGA AACGTACCCACAAGGCCTCGTCCTCGTCCCTCGTGGGGAGGAAGATGATAGCAGCGTTGTCGTCGGTCCTCACGTCAGAGGCAGCCGGCTGAGAGCTGCT GGCGATGCGGAAGTAGATCTCCTGCTTCCTGGTACTTCAAGGCTCCAAATCCAGCTTGGGGTAAACATGCCAGCAAGAGCAGAACAGATAGCCGAGGAGG AGAAACAGAAGTTCCACGGAGTCTATGACGTGGTCCTCTACCTCGGGATAATCGACATCCTCCAAGAGTACAACATTAGCAAGAAGATTGAGCATGCTTA CAAATCTTTCCAGTTCGACTCGCTGTCAATCTCGGCCGTTGATCCTACGTTCTACTCCAAACGCTTCCTGGAGTTCATTCAGAAAGTGTTCCCTCCCAAT GGCATCAACCATTAG
AA sequence Show only first row Show all	>Lus10022606 pacid=23178593 polypeptide=Lus10022606 locus=Lus10022606.g ID=Lus10022606.BGIv1.0 annot-version=v1.0 MSAQVAIVGDGERGPTLADRTKSVDLISSRDFSYLSVNGDAIPRFSDSPSFRTGELFLTNGESYLGSLLGNVPEGRGKYVWSAGCIYDGEWRCGIRNGTG RIQWPSGAAYEGEFSGGYMHGSGSYISANKISYRGRWRLNLKHGLGYQVYPNRDVFEGSWIQGTAEGPGKYTWANGNVYMGNMKGGKMTGKGTLTWVNGD SFEGSWLNGMMHGVGAYTWRDGGCYVGTWTHGLKDGKGSFYPSGSRYSSVQERYLNALRKRGLLPDMRKNHAHIHHHPSSVDMDQRSHHRDSSENVSRSR NVSLERRWSLEVSIEKEIAHDSTLVDSSEVNGAVVPPILEREYMQGVLISEIVLNDTFSSMSRRARRRQKKLVREIKRPGETILKGHRSYDLMLSLQLGI RYTVGKITPVQRREVRTSDFGPRASFWMQFPKNGSQLTPSHRSDDFKWKDYCPMVFRNLREMFKIDAADYMMSICGNDALRELSSPGKSGSIFFLSQDDR FMIKTLRKSEVKVLLNMLPDYHHHVRTYENTLITKFFGLHRIKPSSGQKFRFVVMGNMFCTEVRIHRRFDLKGSSLGRSTEKIEIDENTTLKDLDLNYSF YLEPSWRESLLKQIETDSKFLEANRIMDYSLLLGVHYRAPQHLRPITLLNRNEGLGVLAEEDTIEDETYPQGLVLVPRGEEDDSSVVVGPHVRGSRLRAA GDAEVDLLLPGTSRLQIQLGVNMPARAEQIAEEEKQKFHGVYDVVLYLGIIDILQEYNISKKIEHAYKSFQFDSLSISAVDPTFYSKRFLEFIQKVFPPN GINH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10022606 [exp]	0	1
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10007305 [exp]	2.6	0.9536
AT4G35900	bZIP	ATBZIP14, FD-1,...	Basic-leucine zipper (bZIP) tr...		Lus10017283 [exp]	5.1	0.9115
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10029252 [exp]	8.4	0.9306
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10024362 [exp]	11.4	0.9259
AT3G06240			F-box family protein (.1)		Lus10001105 [exp]	12.2	0.9256
AT3G06240			F-box family protein (.1)		Lus10014793 [exp]	12.2	0.9236
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10021505 [exp]	14.0	0.9109
AT5G40240			nodulin MtN21 /EamA-like trans...		Lus10039481 [exp]	14.5	0.9111
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10009412 [exp]	15.9	0.8514
					Lus10018472 [exp]	18.7	0.8924

Compare expression of checked genes

Lus10022606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.