Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32600 303 / 7e-103 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021506 [exp] 332 / 1e-113 AT2G32600 391 / 9e-138 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G121300 [exp] 313 / 3e-106 AT2G32600 372 / 4e-130 hydroxyproline-rich glycoprotein family protein (.1) Potri.016G097600 [exp] 313 / 3e-106 AT2G32600 370 / 2e-129 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022607 pacid=23178659 polypeptide=Lus10022607 locus=Lus10022607.g ID=Lus10022607.BGIv1.0 annot-version=v1.0 ATGGATAGAGAATGGGGCTCCAAGCCAGGAAGCGGAGGCGCCGCCTCCTCTCAGAACGAAGCAATCGACCGCCGCGAAAGGCTCCGGCGACTGGCTCTTG AGACGATCGACCTGGCCAAGGATCCCTATTTCATGCGCAATCACCTCGGAAGTTATGAGTGTAAGCTGTGTCTGACTTTGCACAACAATGAAGGAAACTA CCTGGCGCACACACAAGGGAAACGTCATCAGACGAATCTGGCGAAGAGAGCTGCTCGCGAGGCTAAGGAATCTCCTGCTCTCCCTCAGCCTAACAAGCGC AAAGTTAACATTAAAAAGTCAGTAAAAATTGGTAGACCTGGATACAGAGTCACGAAACAGTTTGATCCAGAGACAAAGCAGAGGTCCCTTCTCTTTCAGA TTGAATACCCTGAAATTGAAGACAACACAAAGCCAAGGCACAGGTTTATGTCGTCCTATGAGCAGAAAGTCCAATCGTATGATAAGAGCTACCAGTATCT TTTATTCGCAGCGGATCCATACGAGATCGTTGCCTTCAAGGTACAGAGTGAATCCGTGTTAAAACTTTTTACGATCTCATCTTACTTCGCTGCAGATATG CCTAATGTCGCTTTGGGTGTCCTGCGGAGTTGTTCCTTTAAACCGAACCCCCCGGAAGCCAACAAGCCTCCGGCAACGAACGGCTCGGCTGCTCCTGGTG TTCCTCCGCCCCCACCTCCGCCAGCAGGAGCAAGACCACCTCCACCGCCGGTTGGTGGATCACTGCCGCCTCCACCGCCTCCCATGGGTAACGGTCCTCG GCCTATGCCACCTGGGGAAGCTCCACCAGCCCCACCTCCGCCTCCTGGTGGAAGTGGAATGCCACCAAACTTCACTCCGGGTGCTCCGATGGGTAGGCCT CCGATGCCTGGTCCTCCTCCACAAGGCTTCCCTGGGCAACATCCTCCCCCTCCTCCCAACATGGGATAG
AA sequence Show only first row Show all	>Lus10022607 pacid=23178659 polypeptide=Lus10022607 locus=Lus10022607.g ID=Lus10022607.BGIv1.0 annot-version=v1.0 MDREWGSKPGSGGAASSQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKESPALPQPNKR KVNIKKSVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDNTKPRHRFMSSYEQKVQSYDKSYQYLLFAADPYEIVAFKVQSESVLKLFTISSYFAADM PNVALGVLRSCSFKPNPPEANKPPATNGSAAPGVPPPPPPPAGARPPPPPVGGSLPPPPPPMGNGPRPMPPGEAPPAPPPPPGGSGMPPNFTPGAPMGRP PMPGPPPQGFPGQHPPPPPNMG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32600			hydroxyproline-rich glycoprote...		Lus10022607 [exp]	0	1
AT2G32600			hydroxyproline-rich glycoprote...		Lus10021506 [exp]	1.0	0.9267
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Lus10042169 [exp]	1.4	0.8873
AT1G28120			unknown protein		Lus10030429 [exp]	3.0	0.8580
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10018347 [exp]	4.7	0.8254
AT1G61150			LisH and RanBPM domains contai...		Lus10018464 [exp]	5.3	0.8336
AT3G49910			Translation protein SH3-like f...		Lus10011540 [exp]	11.8	0.8511
AT5G43970		ATTOM22-V, TOM2...	TRANSLOCASE OUTER MITOCHONDRIA...		Lus10022876 [exp]	13.0	0.8497
AT1G52530			unknown protein		Lus10003678 [exp]	14.0	0.8213
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Lus10008933 [exp]	16.5	0.8325
AT1G16520			unknown protein		Lus10031771 [exp]	16.9	0.7673

Compare expression of checked genes

Lus10022607 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.