Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03530 347 / 3e-123 ATRABALPHA, AtRABC2a, AtRab18B ,ATRAB ALPHA ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) AT1G43890 304 / 4e-106 ATRAB-C1, RAB18-1, ATRAB18, AtRABC1 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) AT3G09910 291 / 5e-101 AtRab18C, AtRABC2b RAB GTPase homolog C2B (.1.2.3) AT1G02130 176 / 8e-56 ARA5, AtRABD2a, AtRab1B, Ara-5 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) AT4G35860 174 / 9e-55 ATGB2, AtRABB1b, Atrab2C GTP-binding 2 (.1.2) AT3G11730 171 / 1e-53 ATFP8, AtRABD1 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) AT3G53610 169 / 6e-53 ATRAB8, AtRab8B, AtRABE1a RAB GTPase homolog 8 (.1.2.3) AT5G59840 169 / 6e-53 Ras-related small GTP-binding family protein (.1) AT4G17530 168 / 1e-52 RAB1C, AtRab1C, AtRABD2c RAB GTPase homolog 1C (.1) AT5G47200 168 / 1e-52 AtRABD2b, AtRab1A ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021507 [exp] 422 / 1e-152 AT5G03530 352 / 5e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10014409 [exp] 375 / 4e-134 AT5G03530 351 / 8e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10023910 [exp] 365 / 3e-130 AT5G03530 353 / 2e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10029745 [exp] 304 / 4e-101 AT1G43900 422 / 2e-144 Protein phosphatase 2C family protein (.1) Lus10042775 [exp] 283 / 2e-93 AT1G43900 434 / 4e-150 Protein phosphatase 2C family protein (.1) Lus10040423 [exp] 256 / 5e-87 AT5G03530 278 / 1e-95 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10037940 [exp] 230 / 2e-76 AT5G03530 244 / 9e-82 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10038671 [exp] 230 / 3e-76 AT5G03530 241 / 8e-81 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10010999 [exp] 172 / 3e-54 AT5G47200 387 / 3e-139 ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G097800 [exp] 355 / 2e-126 AT5G03530 349 / 5e-124 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.006G121400 [exp] 351 / 1e-124 AT5G03530 335 / 2e-118 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.002G074400 [exp] 306 / 4e-107 AT1G43890 363 / 2e-129 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.010G229600 [exp] 302 / 2e-105 AT5G03530 311 / 7e-109 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.005G063500 [exp] 295 / 8e-103 AT1G43890 346 / 9e-123 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.007G105500 [exp] 295 / 2e-102 AT1G43890 343 / 1e-121 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.008G032000 [exp] 281 / 3e-97 AT5G03530 290 / 1e-100 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.003G081800 [exp] 174 / 8e-55 AT1G02130 391 / 9e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.001G152800 [exp] 173 / 1e-54 AT1G02130 382 / 2e-137 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.014G049400 [exp] 172 / 3e-54 AT1G02130 390 / 2e-140 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10022608 pacid=23178588 polypeptide=Lus10022608 locus=Lus10022608.g ID=Lus10022608.BGIv1.0 annot-version=v1.0 ATGGCAGGGCAAAGTAGTAATGGAGGGTATGATCTGTCGTTCAAGATATTGCTGATTGGTGACTCTTCTGTGGGGAAAAGCAGCCTTCTTCTCACCTTTA TCTCAACCTCTGCAGTTCAGGATCTTCCTCCCACCATTGGGGTGGACTTTAAGATCAAGCAGCTAACAGTAGCTGGGAAGAAACTGAAGCTCACCATTTG GGACACTGCTGGGCAGGAAAGGTTCAGGACTCTAACCAGCTCTTACTACAGAAATGCACAAGGGATCATTCTTGTGTATGATGTAACAAGGAGAGAGACC TTCACAAACCTATCAGACGTGTGGACCAAGGAAGTGGAACTCTACTGCACAAATCAGGACTGTGTCAAGATGCTTGTGGGAAACAAAGTCGACAAGGATT CCGAAAGGGCTGTAACCCGAGAAGAAGGGATCGAGCTCGCTAAAGAGCATGGATGCTTGTTCCTGGAATGCAGTGCCAAGACTCGAGAGAACGTGGAGCA ATGCTTTGAGGAGCTTGCCCTAAAGATAATGGAGGTTCCAAGTCTGCTGGAAGAAGGGTCAACAGCCGGGAAGAGGAACATTCTAAAGCAGATCAAACCA GACAGCCAGTCACTTCAAACTAGCGGCTGTTGCTCTTGA
AA sequence Show only first row Show all	>Lus10022608 pacid=23178588 polypeptide=Lus10022608 locus=Lus10022608.g ID=Lus10022608.BGIv1.0 annot-version=v1.0 MAGQSSNGGYDLSFKILLIGDSSVGKSSLLLTFISTSAVQDLPPTIGVDFKIKQLTVAGKKLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRET FTNLSDVWTKEVELYCTNQDCVKMLVGNKVDKDSERAVTREEGIELAKEHGCLFLECSAKTRENVEQCFEELALKIMEVPSLLEEGSTAGKRNILKQIKP DSQSLQTSGCCS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10022608 [exp]	0	1
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10021507 [exp]	1.0	0.9779
AT1G13920			Remorin family protein (.1)		Lus10037111 [exp]	4.9	0.9356
AT2G42820		HVA22F	HVA22-like protein F (.1)		Lus10010944 [exp]	6.2	0.9339
AT3G24110			Calcium-binding EF-hand family...		Lus10016675 [exp]	8.4	0.8735
AT3G52770		ZPR3	LITTLE ZIPPER 3, protein bindi...		Lus10021375 [exp]	9.2	0.8861
AT3G18260			Reticulon family protein (.1)		Lus10032451 [exp]	9.8	0.9265
AT1G76770			HSP20-like chaperones superfam...		Lus10028577 [exp]	13.0	0.9218
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009316 [exp]	15.5	0.9214
AT1G54400			HSP20-like chaperones superfam...		Lus10032902 [exp]	16.0	0.9181
AT2G42820		HVA22F	HVA22-like protein F (.1)		Lus10031386 [exp]	16.1	0.9157

Compare expression of checked genes

Lus10022608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.