Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28200 129 / 2e-36 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G03510 123 / 6e-34 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G04390 113 / 9e-30 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G10470 99 / 3e-24 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G28710 92 / 3e-23 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G37430 90 / 3e-22 C2H2ZnF ZAT11 C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G46080 83 / 6e-20 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G46090 82 / 3e-19 C2H2ZnF ZAT7 C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G46070 81 / 4e-19 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G59820 81 / 7e-19 C2H2ZnF ZAT12, RHL41 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021509 [exp] 231 / 2e-77 AT5G03510 103 / 3e-27 C2H2-type zinc finger family protein (.1) Lus10023912 [exp] 180 / 2e-56 AT5G03510 160 / 1e-47 C2H2-type zinc finger family protein (.1) Lus10021409 [exp] 130 / 7e-37 AT3G10470 157 / 4e-46 C2H2-type zinc finger family protein (.1) Lus10040425 [exp] 99 / 2e-25 AT5G04390 159 / 5e-48 C2H2-type zinc finger family protein (.1) Lus10024428 [exp] 97 / 6e-25 AT2G37430 157 / 4e-49 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10023540 [exp] 97 / 3e-24 AT5G04390 179 / 3e-54 C2H2-type zinc finger family protein (.1) Lus10023433 [exp] 91 / 2e-22 AT2G28710 117 / 1e-33 C2H2-type zinc finger family protein (.1) Lus10030330 [exp] 91 / 3e-22 AT2G37430 125 / 2e-36 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10040312 [exp] 87 / 6e-21 AT2G37430 112 / 8e-32 C2H2 and C2HC zinc fingers superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G004800 [exp] 126 / 6e-35 AT2G28200 182 / 7e-56 C2H2-type zinc finger family protein (.1) Potri.016G098100 [exp] 123 / 7e-34 AT2G28200 182 / 6e-56 C2H2-type zinc finger family protein (.1) Potri.004G216900 [exp] 120 / 1e-32 AT2G28200 172 / 4e-52 C2H2-type zinc finger family protein (.1) Potri.010G229400 [exp] 117 / 1e-31 AT5G04390 185 / 3e-56 C2H2-type zinc finger family protein (.1) Potri.006G121600 [exp] 115 / 2e-31 AT5G04390 136 / 4e-38 C2H2-type zinc finger family protein (.1) Potri.008G032300 [exp] 116 / 4e-31 AT5G04390 207 / 1e-64 C2H2-type zinc finger family protein (.1) Potri.010G209400 [exp] 92 / 3e-23 AT2G28710 129 / 2e-38 C2H2-type zinc finger family protein (.1) Potri.009G027700 [exp] 90 / 3e-22 AT5G59820 126 / 5e-37 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1) Potri.008G051200 [exp] 89 / 3e-22 AT2G28710 130 / 8e-39 C2H2-type zinc finger family protein (.1) Potri.001G235800 [exp] 84 / 7e-20 AT2G37430 133 / 2e-39 C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022610 pacid=23178574 polypeptide=Lus10022610 locus=Lus10022610.g ID=Lus10022610.BGIv1.0 annot-version=v1.0 ATGGCGGATATGGTGACTGCAATCGACAAGGTGGTCGTTAAGGGTAAGCGGACCAAGCGCCAGAGGCCGCTATTGTTAACAGCTAATTCCAACACCAATA TTCAAGTATCGTCGACAGCGACGACTTCTACTACGTCTTCTACGTCGGCGGAGAGCACGTGCACGGAGGAGGAGGACATGGCCAACTGCTTGATCCTGCT GGCCCAGGGGACTGCATCGCCTGCAGAGGCGTTTGTTTATCAGTGTAAGACATGCGATCGGTGCTTCAATTCGTTCCAGGCGCTTGGAGGTCACAGGGCG AGTCACAAGAGGCTGAGGACGGAGGAGGACAAGGGTAATGATGGTGGTAAGGTAGTGGCGGCGGTGAAATCTGTGGATCGAAAAGAGGAATTGGATCTTT CGTTGGGGATTGTGAATTCGAAGCAGAGTAAGGTTCATGAATGTTCGATCTGCGGCGCCGGGTTTTCGTCCGGGCAGGCGTTGGGAGGACATATGCGGCG GCACAGGACGGTGGTGGAGCCGCCGCTGCCGGTGAGAAGCGGATTGGAGTTGGATCTCAATTTGCCGGCGCCGGAAGATGTGGATGGGCGGGAATTAAAT AAGTTTCGATTTGTATTCTCGTCCTCGTCGGCGGCGGTGGCTTCTGCCTTGGTGGATTGCCATTTCTGA
AA sequence Show only first row Show all	>Lus10022610 pacid=23178574 polypeptide=Lus10022610 locus=Lus10022610.g ID=Lus10022610.BGIv1.0 annot-version=v1.0 MADMVTAIDKVVVKGKRTKRQRPLLLTANSNTNIQVSSTATTSTTSSTSAESTCTEEEDMANCLILLAQGTASPAEAFVYQCKTCDRCFNSFQALGGHRA SHKRLRTEEDKGNDGGKVVAAVKSVDRKEELDLSLGIVNSKQSKVHECSICGAGFSSGQALGGHMRRHRTVVEPPLPVRSGLELDLNLPAPEDVDGRELN KFRFVFSSSSAAVASALVDCHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Lus10022610 [exp]	0	1
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10000985 [exp]	1.7	0.9297
AT5G61350			Protein kinase superfamily pro...		Lus10000562 [exp]	8.7	0.9317
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10027864 [exp]	9.2	0.9320
AT2G43870			Pectin lyase-like superfamily ...		Lus10011418 [exp]	10.1	0.8801
AT5G03510	C2H2ZnF		C2H2-type zinc finger family p...		Lus10021509 [exp]	17.8	0.9114
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10023531 [exp]	18.7	0.9082
AT1G26140			unknown protein		Lus10017899 [exp]	19.1	0.8578
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10035909 [exp]	19.2	0.9131
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10032929 [exp]	23.1	0.9169
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Lus10022577 [exp]	25.4	0.8398

Compare expression of checked genes

Lus10022610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.