Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09880 714 / 0 ATB' BETA, ATB'BETA Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G03470 704 / 0 ATB' ALPHA, ATB'ALPHA Protein phosphatase 2A regulatory B subunit family protein (.1) AT4G15415 556 / 0 ATB'GAMMA, ATB' GAMMA Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G54930 551 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26020 550 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) AT3G21650 547 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT1G13460 546 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G26030 491 / 1e-171 ATB' DELTA, ATB'DELTA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta (.1) AT5G25510 487 / 2e-169 Protein phosphatase 2A regulatory B subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023920 [exp] 773 / 0 AT5G03470 773 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10021511 [exp] 769 / 0 AT3G09880 739 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10014417 [exp] 759 / 0 AT5G03470 759 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10015144 [exp] 572 / 0 AT4G15415 753 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10030002 [exp] 567 / 0 AT4G15415 763 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10035321 [exp] 566 / 0 AT4G15415 764 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10032082 [exp] 550 / 0 AT4G15415 726 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10031536 [exp] 546 / 0 AT3G26020 724 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10036926 [exp] 525 / 0 AT3G26020 709 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G098400 [exp] 749 / 0 AT3G09880 743 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.006G122300 [exp] 734 / 0 AT3G09880 692 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.010G054300 [exp] 577 / 0 AT3G26020 746 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.014G157000 [exp] 577 / 0 AT3G21650 775 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.008G180000 [exp] 569 / 0 AT3G26020 711 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.002G226200 [exp] 562 / 0 AT4G15415 740 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.017G070100 [exp] 551 / 0 AT1G13460 728 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.008G179900 [exp] 547 / 0 AT3G26020 731 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.010G054400 [exp] 543 / 0 AT3G26020 730 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.018G034200 [exp] 491 / 4e-171 AT5G25510 809 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01603 [flax] [poplar] B56 Protein phosphatase 2A regulatory B subunit (B56 family)
Representative CDS sequence Show only first row Show all	>Lus10022612 pacid=23178638 polypeptide=Lus10022612 locus=Lus10022612.g ID=Lus10022612.BGIv1.0 annot-version=v1.0 ATGTTTAAGAAGATCATAAAAGGAGGGCGGAAGCCGTCAAAGTCCGACGATGGATTTGGAAACCAGGCCCACCGCCAACCGGGAAATGTGGTGGTTAACC ACGCGTCGAGGGGGAGTACCGTGCCGGCGGTGGAATCGCCGGCGGTGGTGAAGACGCCGCCGCCTATGCAATCGGTGGAGCCGCTCCCTCCCTTCCGGGA CGTTCCGGTTTCAGAGCGGCAGAATCTCTTCCTCCGGAAGCTTCAGAATTGCTGCTTCCAGTTTGATTTCGACGACACGCTGAACTCGGTCCGGGAGAAG GAAATCAAGAGGCAGACGCTGTTGGAGCTCGTGGATTTCATCCAATCCGGTTCGGGTAAGATCTCGGAAGTCTGTCAGGAGAAAATGATCAAAATGGTTT CCGTTAACATATTCCGGAGCTTGCCTCCGAATTCCCACGAGAACACCGGCCAGGAGCCTGCCGATCCTGAAGAAGAGGAGCCGTATTTGGAACCTTCATG GCCTCATTTGCAGCTTGTTTACGAGCTTGTGTTGCGATATGTCGTGTCGTCCGATACGGACACTAAGGTCGCCAAGAGGTACATTGATCATTCCTTCGTG TTGAAGTTGCTCGATTTGTTCGATTCGGAGGATCCTCGGGAGAGGGAGTATCTAAAAACTATACTGCATAGGATTTACGGCAAGTTCATGGTGCATCGAC CCTTCATTAGGAAGGCAATAAACAACATTTTTTATCGGTTCATATACGAGACAGAGCGGCACAGTGGGATAGGGGAGCTTCTGGAGATACTGGGGAGTAT AATAAACGGGTTTGCCTTGCCGATGAAGGAAGAGCATAAGTTGTTCCTTGTTAGGGCGCTTATACCGCTACATAAACCCAAGGCGATTTCGATATACCAT CAGCAGTTGTCGTATTGTATAACTCAGTTTGTTGAGAAGGACTTCAAACTGGCGGATACTGTGATTAGGGGCTTGTTGAAGTATTGGCCTGTGATTAATT GCCCCAAGGAAGTTCTGTTTCTAGGCGAGCTCGAAGAAGTGCTTGAACGGACTAAACAGGCCGAGTTCCAGCGATGTATGGTTCCTCTGTTCCGACAGAT TGGCCGTTGCTTAACTAGTTCGCATTTTCAGGTAGCAGAGCGAGCGCTGTTCTTGTGGAACAACGAGCACATAGTGGGGCTAATCGCGCAGAACCGGAGC GTTGTACTACCGGTGCTCTACGAAGCACTGGAGAAGAACATCCAGTCGCACTGGAACCAGGCGGTGCACGGGCTTACGGTGAACGTGCGGAAGATGTTCC TCGAAATGGACGGGGAGCTGGTCGAGGAATGCCAGAGGCAGTACGAGGAGAAGGAGTCGAGAGCGAAAGATGTGGAAGAGCAGCGGGAGATAAACTGGAA GAGGCTTGCGGACGTTGCTGCAGAGAGAGGAGATGACGTGATGATGACTGCTTGA
AA sequence Show only first row Show all	>Lus10022612 pacid=23178638 polypeptide=Lus10022612 locus=Lus10022612.g ID=Lus10022612.BGIv1.0 annot-version=v1.0 MFKKIIKGGRKPSKSDDGFGNQAHRQPGNVVVNHASRGSTVPAVESPAVVKTPPPMQSVEPLPPFRDVPVSERQNLFLRKLQNCCFQFDFDDTLNSVREK EIKRQTLLELVDFIQSGSGKISEVCQEKMIKMVSVNIFRSLPPNSHENTGQEPADPEEEEPYLEPSWPHLQLVYELVLRYVVSSDTDTKVAKRYIDHSFV LKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALIPLHKPKAISIYH QQLSYCITQFVEKDFKLADTVIRGLLKYWPVINCPKEVLFLGELEEVLERTKQAEFQRCMVPLFRQIGRCLTSSHFQVAERALFLWNNEHIVGLIAQNRS VVLPVLYEALEKNIQSHWNQAVHGLTVNVRKMFLEMDGELVEECQRQYEEKESRAKDVEEQREINWKRLADVAAERGDDVMMTA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Lus10022612 [exp]	0	1
AT3G50120			Plant protein of unknown funct...		Lus10009871 [exp]	3.2	0.8576
AT1G35420			alpha/beta-Hydrolases superfam...		Lus10000375 [exp]	4.2	0.8416
AT2G45910			U-box domain-containing protei...		Lus10040825 [exp]	6.3	0.8346
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10020105 [exp]	6.6	0.8355
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10000913 [exp]	7.3	0.8185
AT3G09030			BTB/POZ domain-containing prot...		Lus10004834 [exp]	8.8	0.7963
					Lus10008223 [exp]	9.8	0.8132
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10026597 [exp]	9.9	0.8143
AT3G01750			Ankyrin repeat family protein ...		Lus10036974 [exp]	10.4	0.8472
AT5G45030			Trypsin family protein (.1.2)		Lus10036208 [exp]	13.9	0.7712

Compare expression of checked genes

Lus10022612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.