Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39210 164 / 5e-48 Major facilitator superfamily protein (.1) AT2G28120 164 / 6e-48 Major facilitator superfamily protein (.1) AT3G01930 97 / 1e-23 Major facilitator superfamily protein (.1.2) AT5G14120 95 / 5e-23 Major facilitator superfamily protein (.1) AT1G74780 92 / 9e-22 Nodulin-like / Major Facilitator Superfamily protein (.1) AT5G50520 89 / 6e-21 Major facilitator superfamily protein (.1) AT5G50630 89 / 6e-21 Major facilitator superfamily protein (.1) AT2G34355 87 / 2e-20 Major facilitator superfamily protein (.1) AT2G34350 86 / 8e-20 Nodulin-like / Major Facilitator Superfamily protein (.1) AT1G18940 86 / 1e-19 Nodulin-like / Major Facilitator Superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014640 [exp] 171 / 2e-50 AT2G39210 728 / 0.0 Major facilitator superfamily protein (.1) Lus10033790 [exp] 166 / 1e-48 AT2G39210 734 / 0.0 Major facilitator superfamily protein (.1) Lus10037948 [exp] 154 / 2e-44 AT2G39210 839 / 0.0 Major facilitator superfamily protein (.1) Lus10038682 [exp] 152 / 1e-43 AT2G39210 829 / 0.0 Major facilitator superfamily protein (.1) Lus10037949 [exp] 148 / 7e-42 AT2G39210 807 / 0.0 Major facilitator superfamily protein (.1) Lus10021513 [exp] 146 / 9e-42 AT2G39210 587 / 0.0 Major facilitator superfamily protein (.1) Lus10022614 [exp] 141 / 1e-39 AT2G39210 652 / 0.0 Major facilitator superfamily protein (.1) Lus10021512 [exp] 129 / 1e-38 AT2G39210 155 / 1e-45 Major facilitator superfamily protein (.1) Lus10035203 [exp] 102 / 2e-25 AT3G01930 876 / 0.0 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G122400 [exp] 172 / 7e-51 AT2G39210 767 / 0.0 Major facilitator superfamily protein (.1) Potri.004G215600 [exp] 164 / 2e-48 AT2G28120 810 / 0.0 Major facilitator superfamily protein (.1) Potri.009G006400 [exp] 162 / 2e-47 AT2G28120 845 / 0.0 Major facilitator superfamily protein (.1) Potri.008G032901 [exp] 156 / 4e-45 AT2G39210 830 / 0.0 Major facilitator superfamily protein (.1) Potri.001G194500 [exp] 143 / 3e-43 AT2G28120 377 / 9e-130 Major facilitator superfamily protein (.1) Potri.002G133900 [exp] 145 / 5e-41 AT2G39210 666 / 0.0 Major facilitator superfamily protein (.1) Potri.017G064201 [exp] 100 / 6e-25 AT3G01930 805 / 0.0 Major facilitator superfamily protein (.1.2) Potri.001G329100 [exp] 99 / 2e-24 AT3G01930 869 / 0.0 Major facilitator superfamily protein (.1.2) Potri.015G067000 [exp] 96 / 3e-23 AT1G74780 562 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Potri.012G098900 [exp] 94 / 2e-22 AT5G14120 681 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF06813 [flax] [poplar] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Lus10022613 pacid=23178548 polypeptide=Lus10022613 locus=Lus10022613.g ID=Lus10022613.BGIv1.0 annot-version=v1.0 ATGCCTGTCGAAGCGTCCAATGTCAGATGTCTATCGGGGAAGAGCTTCCTCCGCCAGGTCATCATCGGGCGGTGGTTCATGTTCTTCGCAGCTTTACTAA TCCAGGCCGGGTCAGGTGCCTCGTACATCTTCGGGATATATTCCCACGACATCAAATCCTCGCTAGGGTACGACCAATCCACGCTCAACCTCCTCGGGGT TTTTGAAAGACCTCGGGGTCCTAGCCGGGTTAATCAACGAGGTGTTACCGGCGTGGGTTATACTATTGGTGGGTGCTATCATGAACTTCGATGCGTACTT CATGATCGGCTCGCTGTCGTCGGGAAGATAGCCAAGCCTCCCGTGTGGCAGATGTGCATCTACATCTGCGTCGGAGCCAATTCTCAGGCGTTTGCCAACA CGCGAGCACTGGTGACATGGGTGAAGAACTTCCCTGGAAGCAGAGGAGCAGTTTTAGGGCTATTGAAAGGAATGGTGGGGCTAAGCGGAGCAATCCTCAC TCTCTTCTATCGAGCATTACCAAGTCGTTGA
AA sequence Show only first row Show all	>Lus10022613 pacid=23178548 polypeptide=Lus10022613 locus=Lus10022613.g ID=Lus10022613.BGIv1.0 annot-version=v1.0 MPVEASNVRCLSGKSFLRQVIIGRWFMFFAALLIQAGSGASYIFGIYSHDIKSSLGYDQSTLNLLGVFERPRGPSRVNQRGVTGVGYTIGGCYHELRCVL HDRLAVVGKIAKPPVWQMCIYICVGANSQAFANTRALVTWVKNFPGSRGAVLGLLKGMVGLSGAILTLFYRALPSR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39210			Major facilitator superfamily ...		Lus10022613 [exp]	0	1

Compare expression of checked genes

Lus10022613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.