Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39210 518 / 1e-178 Major facilitator superfamily protein (.1) AT2G28120 485 / 2e-166 Major facilitator superfamily protein (.1) AT1G74780 223 / 2e-65 Nodulin-like / Major Facilitator Superfamily protein (.1) AT2G34355 222 / 3e-65 Major facilitator superfamily protein (.1) AT5G50520 203 / 3e-58 Major facilitator superfamily protein (.1) AT5G50630 203 / 3e-58 Major facilitator superfamily protein (.1) AT4G34950 202 / 2e-57 Major facilitator superfamily protein (.1) AT5G14120 150 / 8e-39 Major facilitator superfamily protein (.1) AT3G01930 147 / 3e-38 Major facilitator superfamily protein (.1.2) AT2G16660 147 / 9e-38 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021513 [exp] 805 / 0 AT2G39210 587 / 0.0 Major facilitator superfamily protein (.1) Lus10014640 [exp] 529 / 0 AT2G39210 728 / 0.0 Major facilitator superfamily protein (.1) Lus10033790 [exp] 520 / 6e-180 AT2G39210 734 / 0.0 Major facilitator superfamily protein (.1) Lus10038682 [exp] 508 / 5e-175 AT2G39210 829 / 0.0 Major facilitator superfamily protein (.1) Lus10037948 [exp] 503 / 3e-173 AT2G39210 839 / 0.0 Major facilitator superfamily protein (.1) Lus10037949 [exp] 503 / 6e-173 AT2G39210 807 / 0.0 Major facilitator superfamily protein (.1) Lus10042170 [exp] 223 / 2e-65 AT1G74780 566 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Lus10034491 [exp] 193 / 2e-54 AT4G34950 788 / 0.0 Major facilitator superfamily protein (.1) Lus10025053 [exp] 190 / 3e-53 AT4G34950 793 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G133900 [exp] 631 / 0 AT2G39210 666 / 0.0 Major facilitator superfamily protein (.1) Potri.006G122400 [exp] 542 / 0 AT2G39210 767 / 0.0 Major facilitator superfamily protein (.1) Potri.008G032901 [exp] 497 / 2e-170 AT2G39210 830 / 0.0 Major facilitator superfamily protein (.1) Potri.004G215600 [exp] 474 / 2e-162 AT2G28120 810 / 0.0 Major facilitator superfamily protein (.1) Potri.009G006400 [exp] 470 / 2e-160 AT2G28120 845 / 0.0 Major facilitator superfamily protein (.1) Potri.001G194500 [exp] 202 / 3e-61 AT2G28120 377 / 9e-130 Major facilitator superfamily protein (.1) Potri.015G067000 [exp] 202 / 9e-58 AT1G74780 562 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Potri.004G173400 [exp] 201 / 3e-57 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.005G112400 [exp] 196 / 1e-55 AT4G34950 618 / 0.0 Major facilitator superfamily protein (.1) Potri.006G060900 [exp] 166 / 1e-44 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily CL0015 [flax] [poplar] MFS PF06813 [flax] [poplar] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Lus10022614 pacid=23178665 polypeptide=Lus10022614 locus=Lus10022614.g ID=Lus10022614.BGIv1.0 annot-version=v1.0 ATGGCTGAGTTCAAAAGTTGGAGGGTGATAAAAAGCTTCGGCTTTCAAATCCTTAGAGGGAGATGGTTCATGGTGTTTGCATCACTCCTGATCATGTCTG TAAACGGCACAAGCTACATGTTCGGCCTTTACTCAGGAGAGATCAAATCATCACTAGGCTACGATCAAACGACACTTAGCAAACTGAGCTTCTACAAGGA CTTAGGAGGAAACCTGGGATTTCTTGCCGGCTTTGCATATGAACTCATCCCACCATGGATGGTTCTCTCCATCGGATCGATTATGAACTTCTGCGGTTAT TTCCTCGTCTGGTTAGCAGTCACCAACCGAATTTCGAAGCCACACGTCTGGCAAGTGTGCCTCTACATGTGCCTAGCCACACACGCTGCTTCATATCCGA ATACTGGAGCTTTGGTCACTTGTGTCAAGAACTTCCCCGAGAATCGAGGCAGTGTTATCGGGCTGCTGAAAGGTTTGATTGGGTTGAGTGGAGCTATAAT CACACAGATTTACCATGCTTCTTATGGAAACAGCGATTCTTCCAGTGCAGTCATCTTGCTCATTGCTTGGCTCCCGGCCATTGTTCCCTTGCTGTTCGCT CCTATTGTTCGAGCCATGAAATTCGATAGGCAGGAGAAGGAACTCAAAGTGTTCTACCATTTCCTGTACGTTGCAATTGCCATTGCTGGATTCATCATGT TCATCATCATCATTCAGAACAGATTCAGCTTCAACCGAGGAGAGTACGTTGGAACTGCTTCAGTCGTTATCCTTGCATTGCTTCTCCCTCTAGCCATTGT CGCCCGAGAAGAACTCAAGCTCTGGAGAAGCGAGAAACAAACGGCAAACAGCCAAACAGAACTCAATCCAGTGACTGGAAATGAAAATACACTTCCACTA ACAGCTACCACGTCAGATCCCCAAAAATTGGTGCTAATACTATCATCCTGGGTCAAGAGCATATTCAATCAACCAGATAGAGGAGAAGATTACTCGATCT TACAAGCGATTTTCAGCATAGACATGGCGATCATCTTTGTGGCAACAACTTGCGGGGCTGGAGGAGCGCTGGCGGCGATCGACAACCTAGGTCAGATCGC CGAATCCCTAGGGTACAAAAACCGCAGAATCTCCACCTTCATCTCTCTGATCAGCATCTGGAACTTCTTCGGCCGAGTTCTCGCTGGATTCGCCTCCGAG ATCCTCTTAACTCGGTACAATTTCCCTCGTCCGTTTATGCTCTCAACTGTAATCCTCCTCTCCTGCGTCGGCCACATGCTAATCGCCATCGGAGTCCCTA ACTCCCTCTACTTCGCCTCCATCCTCTCCGGATTCTGCCTCGGAGCTCAGTTCCCGCTGGTCTCCGCGATCATATCCGAGATCTTTGGGCTGAAGCACTT CGCGACGTTGTATAGCGTCGGATCCGTTTCCAGCCCCGTCGGCTCGTTGATCTTCAACGTGAAAGTCGCCGGTCGTCTGTACGACGAGGAAGCTCTGAGG CAATTGAAAAGATTAGGAATCAAGAGAGAGCCCGGAAAGGAGTTGAAATGCGTAGGGGTGAGCTGTTTCCGTACGGGATTCCTCGTAATATCGGCGGCGA GCTTTGTGGGGTTTGTCGTTTCGGTTGTGTTGGTATGGAGGACGAAGGATTTTTACAAGAGTGATGTGTACAAGAAGTACAGGACGGACTCGGACGAGGC TGCGGCGGAGAGGCCGGAGAATGAATCTTAA
AA sequence Show only first row Show all	>Lus10022614 pacid=23178665 polypeptide=Lus10022614 locus=Lus10022614.g ID=Lus10022614.BGIv1.0 annot-version=v1.0 MAEFKSWRVIKSFGFQILRGRWFMVFASLLIMSVNGTSYMFGLYSGEIKSSLGYDQTTLSKLSFYKDLGGNLGFLAGFAYELIPPWMVLSIGSIMNFCGY FLVWLAVTNRISKPHVWQVCLYMCLATHAASYPNTGALVTCVKNFPENRGSVIGLLKGLIGLSGAIITQIYHASYGNSDSSSAVILLIAWLPAIVPLLFA PIVRAMKFDRQEKELKVFYHFLYVAIAIAGFIMFIIIIQNRFSFNRGEYVGTASVVILALLLPLAIVAREELKLWRSEKQTANSQTELNPVTGNENTLPL TATTSDPQKLVLILSSWVKSIFNQPDRGEDYSILQAIFSIDMAIIFVATTCGAGGALAAIDNLGQIAESLGYKNRRISTFISLISIWNFFGRVLAGFASE ILLTRYNFPRPFMLSTVILLSCVGHMLIAIGVPNSLYFASILSGFCLGAQFPLVSAIISEIFGLKHFATLYSVGSVSSPVGSLIFNVKVAGRLYDEEALR QLKRLGIKREPGKELKCVGVSCFRTGFLVISAASFVGFVVSVVLVWRTKDFYKSDVYKKYRTDSDEAAAERPENES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39210			Major facilitator superfamily ...		Lus10022614 [exp]	0	1
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10007278 [exp]	2.0	0.8479
					Lus10001144 [exp]	17.1	0.8145
AT1G10380			Putative membrane lipoprotein ...		Lus10037078 [exp]	34.6	0.7723
AT2G23060			Acyl-CoA N-acyltransferases (N...		Lus10026088 [exp]	37.7	0.8285
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10039277 [exp]	47.0	0.8078
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Lus10023275 [exp]	71.6	0.7892
AT2G25735			unknown protein		Lus10007679 [exp]	106.3	0.7913
AT5G39150			RmlC-like cupins superfamily p...		Lus10006543 [exp]	109.0	0.7966
AT1G80290			Nucleotide-diphospho-sugar tra...		Lus10020174 [exp]	110.2	0.8008
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10022546 [exp]	120.5	0.7912

Compare expression of checked genes

Lus10022614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.