Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27730 476 / 1e-165 Protein of unknown function (DUF1624) (.1) AT5G47900 311 / 2e-101 Protein of unknown function (DUF1624)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021514 [exp] 904 / 0 AT5G27730 540 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10020653 [exp] 476 / 2e-165 AT5G27730 624 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10010030 [exp] 336 / 1e-110 AT5G47900 433 / 2e-149 Protein of unknown function (DUF1624) Lus10039223 [exp] 266 / 9e-85 AT5G47900 349 / 1e-117 Protein of unknown function (DUF1624) Lus10027468 [exp] 258 / 4e-81 AT5G47900 380 / 9e-130 Protein of unknown function (DUF1624) Lus10019798 [exp] 229 / 3e-70 AT5G47900 329 / 5e-110 Protein of unknown function (DUF1624) Lus10014112 [exp] 189 / 6e-55 AT5G47900 237 / 4e-74 Protein of unknown function (DUF1624) Lus10036333 [exp] 185 / 2e-54 AT5G47900 269 / 6e-89 Protein of unknown function (DUF1624) Lus10000090 [exp] 132 / 9e-36 AT5G47900 174 / 5e-54 Protein of unknown function (DUF1624)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G122500 [exp] 663 / 0 AT5G27730 521 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.013G016900 [exp] 484 / 9e-169 AT5G27730 669 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.005G025200 [exp] 465 / 3e-161 AT5G27730 595 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.001G071500 [exp] 320 / 9e-105 AT5G47900 519 / 0.0 Protein of unknown function (DUF1624) Potri.014G123800 [exp] 320 / 2e-104 AT5G47900 442 / 1e-152 Protein of unknown function (DUF1624) Potri.003G159200 [exp] 301 / 3e-97 AT5G47900 492 / 1e-172 Protein of unknown function (DUF1624) Potri.004G176400 [exp] 291 / 5e-94 AT5G47900 400 / 2e-137 Protein of unknown function (DUF1624) Potri.009G136700 [exp] 280 / 2e-89 AT5G47900 395 / 2e-135 Protein of unknown function (DUF1624)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0316 [flax] [poplar] Acyl_transf_3 PF07786 [flax] [poplar] DUF1624 Protein of unknown function (DUF1624)
Representative CDS sequence Show only first row Show all	>Lus10022615 pacid=23178642 polypeptide=Lus10022615 locus=Lus10022615.g ID=Lus10022615.BGIv1.0 annot-version=v1.0 ATGAAGAATCCTGAGATTCTGGAAGAAGGGCTTGCTCACAACAAGGTGTCAATTGACAATGCAGAACCGAACTGGAATGCTACACATGGAATCAGTGCGG AGAAAGAAGGGAGAAATGAAGTATCTGATCCACCGCGAGTCAAACCAAACGGAGAAAAGCATAAGAGCAAGAGGGTTGCAACTCTGGATGCGTTCAGAGG GCTTACAGTAGTGTTGATGATTTTGGTAGATAATGCCGGTGAATCATATCCACGGATGAATCATACGCCATGGAACGGCTGCAACTTGGCGGATTTCGTC ATGCCCTTTTTCCTCTTCATTGTTGGTGTTGCAATCGCTCTGGCCTTGAAGAGAGTTCCTAAGAAGAGCGATGCTGTAAGGAGGGTACTCATGAGGACAT TGAAGCTTCTCTTTTGGGGACTTCTGTTGCAAGGAGGATATTCACACGCTCCCAATGACCTCGAATATGGAGTCGACATGAAGTTGATTCGATGGTGTGG CATTCTCCAGAGAATTGCATTAGTATACATGATTGTGGCTCTAATAGAGACCTTCACCATCAAGCAAAGACAAACCATCTTGAATCCTAGCCATTTCTCA ATCTTCACAGCATACCGATGGCAATGGCTTGGAGGCTTCATCGCGTTCCTTGTGTACATGATCACGACATTTTCACTCTACGTCCCCGATTGGAGTTTCG TGAACCGTGATGAAAAGATGAGATATACGGTAAAATGCGGGATGAGGGGCCACTTTGGACCAGCATGCAACGCTGTTGGCCACGTGGACAGAGCACTGTG GGGTGTTAACCATCTCTATGCTTACCCAGAATGGCAGCGCCTCAAGGCTTGCACTCTCAGCTATCCTAGCTCCGGCTCTTTTCGCGATGACGCTCCTTTT TGGTGCCATGGACCATTTGAACCTGAAGGCTTGTTGAGTTCAATCTCAGCTATCCTCTCTGGCACCATTGGCATTCATTATGGACATGTTTTGATACATT TCAAGGATAACTCCGAGAGACTCAAGCAATGCGTTTCAATAGGGGTTGGGTTGATCATCATTGCTATCATTCTCCATTTCACCGATGCTATTCCAATGAA CAAGCAGCTCTACAGCTTCAGCTACGTCTGCTTCACAGCTGGAGTTGCTGGCATCGTGTTCTCTGCCTTATATTTGCTGATTGATGTGCTGGAATGGAGA CTACCATTTGTGTTCCTCGAATGGATAGGGATGAATGCAATGCTGGTCTACGTCATGGCTGCTCAAGGCATCTTCGAAGGGTTTATCAATGGCTGGTACT ATGAATCGACCGACAAGACGTTGGTATCCTGGATCCAAAAACACGTGTTCAACGACGTATGGAACTCGGAGAGAGTTGGAAACCTGTTATATGTGATATT CGGGCAGATCACATTCTGGGCAGTTGTGTCTGGGGTACTGCACAGAATGGGTATTTACTGGAAGCTCTGA
AA sequence Show only first row Show all	>Lus10022615 pacid=23178642 polypeptide=Lus10022615 locus=Lus10022615.g ID=Lus10022615.BGIv1.0 annot-version=v1.0 MKNPEILEEGLAHNKVSIDNAEPNWNATHGISAEKEGRNEVSDPPRVKPNGEKHKSKRVATLDAFRGLTVVLMILVDNAGESYPRMNHTPWNGCNLADFV MPFFLFIVGVAIALALKRVPKKSDAVRRVLMRTLKLLFWGLLLQGGYSHAPNDLEYGVDMKLIRWCGILQRIALVYMIVALIETFTIKQRQTILNPSHFS IFTAYRWQWLGGFIAFLVYMITTFSLYVPDWSFVNRDEKMRYTVKCGMRGHFGPACNAVGHVDRALWGVNHLYAYPEWQRLKACTLSYPSSGSFRDDAPF WCHGPFEPEGLLSSISAILSGTIGIHYGHVLIHFKDNSERLKQCVSIGVGLIIIAIILHFTDAIPMNKQLYSFSYVCFTAGVAGIVFSALYLLIDVLEWR LPFVFLEWIGMNAMLVYVMAAQGIFEGFINGWYYESTDKTLVSWIQKHVFNDVWNSERVGNLLYVIFGQITFWAVVSGVLHRMGIYWKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27730			Protein of unknown function (D...		Lus10022615 [exp]	0	1
					Lus10012304 [exp]	3.5	0.9341
AT5G42655			Disease resistance-responsive ...		Lus10032310 [exp]	10.6	0.9373
AT1G61590			Protein kinase superfamily pro...		Lus10034757 [exp]	12.3	0.9369
AT4G35783		RTFL6, DVL17	DEVIL 17, ROTUNDIFOLIA like 6 ...		Lus10041846 [exp]	14.0	0.8904
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10036251 [exp]	18.2	0.9293
AT5G66040		STR16	sulfurtransferase protein 16 (...		Lus10021227 [exp]	18.3	0.9129
AT3G14160			2-oxoglutarate-dependent dioxy...		Lus10020904 [exp]	18.7	0.9233
AT1G68710			ATPase E1-E2 type family prote...		Lus10035068 [exp]	20.3	0.9312
AT4G21690		ATGA3OX3	ARABIDOPSIS THALIANA GIBBERELL...		Lus10008100 [exp]	21.4	0.9041
AT1G14160			Uncharacterised protein family...		Lus10037160 [exp]	22.3	0.9363

Compare expression of checked genes

Lus10022615 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.