Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03455 220 / 3e-75 ACR2, ARATH;CDC25, CDC25 ARSENATE REDUCTASE 2, Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021515 [exp] 264 / 6e-93 AT5G03455 222 / 3e-76 ARSENATE REDUCTASE 2, Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10014420 [exp] 198 / 9e-64 AT5G03455 199 / 2e-63 ARSENATE REDUCTASE 2, Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10023923 [exp] 192 / 2e-61 AT5G03455 195 / 4e-62 ARSENATE REDUCTASE 2, Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G122700 [exp] 217 / 2e-74 AT5G03455 218 / 2e-74 ARSENATE REDUCTASE 2, Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00581 [flax] [poplar] Rhodanese Rhodanese-like domain
Representative CDS sequence Show only first row Show all	>Lus10022616 pacid=23178573 polypeptide=Lus10022616 locus=Lus10022616.g ID=Lus10022616.BGIv1.0 annot-version=v1.0 ATGGCTCGAAGCATATCGTACATAACAGGAACTCAGCTTCTCTCTCTCAAGCGCCGCCCAAATATCGCCATAATCGATGTCAGGGATGACGAGAGGAGCT ACGACGGACATATCGCCGGATCTCTCCACTACGCCAGCGGCGGATTCGGCGATAAGATGTCTAGTCTGATTCAGGAGGTCAAAGGGAAGAAGGACACTCT GGTCTTCCATTGCGCTCTTAGCCAGGTTCGTGGTCCAACCTGCGCAAGAAGGCTGGCTGATTACCTAACCGCGTCAAAAGACGATGCAGGAATCAAGAAT GTGATGGTACTAGAGCATGGGTTCAACGGCTGGGAGGCTGCTGGCAAACCCGTTTGTCGCTGCATTGATGTTCCTTGCAAAGGTAAATGTCTGTAA
AA sequence Show only first row Show all	>Lus10022616 pacid=23178573 polypeptide=Lus10022616 locus=Lus10022616.g ID=Lus10022616.BGIv1.0 annot-version=v1.0 MARSISYITGTQLLSLKRRPNIAIIDVRDDERSYDGHIAGSLHYASGGFGDKMSSLIQEVKGKKDTLVFHCALSQVRGPTCARRLADYLTASKDDAGIKN VMVLEHGFNGWEAAGKPVCRCIDVPCKGKCL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10022616 [exp]	0	1
AT5G49710			unknown protein		Lus10000765 [exp]	3.2	0.9619
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10013019 [exp]	4.7	0.9584
AT4G17960			unknown protein		Lus10000314 [exp]	5.9	0.9544
AT4G33690			unknown protein		Lus10040497 [exp]	6.6	0.9387
AT4G28240			Wound-responsive family protei...		Lus10039758 [exp]	6.7	0.9555
AT4G27130			Translation initiation factor ...		Lus10027181 [exp]	7.2	0.9519
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10022727 [exp]	7.5	0.9584
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10018383 [exp]	7.5	0.9562
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10039335 [exp]	11.5	0.9550
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10005997 [exp]	12.0	0.9536

Compare expression of checked genes

Lus10022616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.