Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03380 147 / 9e-40 Heavy metal transport/detoxification superfamily protein (.1.2) AT2G36950 132 / 2e-34 Heavy metal transport/detoxification superfamily protein (.1) AT5G60800 125 / 1e-32 Heavy metal transport/detoxification superfamily protein (.1.2) AT3G02960 96 / 1e-22 Heavy metal transport/detoxification superfamily protein (.1) AT2G28090 93 / 3e-21 Heavy metal transport/detoxification superfamily protein (.1) AT5G50740 92 / 7e-21 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) AT5G24580 89 / 2e-19 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT5G63530 76 / 5e-15 ATFP3 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2) AT1G29000 70 / 4e-13 Heavy metal transport/detoxification superfamily protein (.1) AT4G38580 57 / 1e-09 HIPP26, ATFP6 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021516 [exp] 262 / 1e-83 AT5G03380 202 / 2e-61 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10014421 [exp] 199 / 7e-59 AT5G03380 193 / 5e-57 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10023924 [exp] 139 / 3e-37 AT5G03380 180 / 6e-54 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10021432 [exp] 133 / 2e-35 AT5G60800 158 / 1e-46 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10016133 [exp] 134 / 4e-35 AT5G60800 175 / 3e-52 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10032245 [exp] 121 / 2e-33 AT2G36950 79 / 2e-18 Heavy metal transport/detoxification superfamily protein (.1) Lus10032923 [exp] 96 / 1e-21 AT5G24580 313 / 1e-106 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10038785 [exp] 91 / 1e-20 AT5G50740 183 / 6e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10039074 [exp] 91 / 2e-20 AT5G50740 182 / 8e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G093100 [exp] 189 / 5e-56 AT2G36950 123 / 5e-32 Heavy metal transport/detoxification superfamily protein (.1) Potri.006G124800 [exp] 181 / 7e-53 AT2G36950 135 / 2e-36 Heavy metal transport/detoxification superfamily protein (.1) Potri.009G007600 [exp] 139 / 3e-37 AT5G60800 157 / 1e-45 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.004G214700 [exp] 133 / 4e-35 AT5G60800 142 / 7e-40 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.016G006600 [exp] 94 / 2e-21 AT5G50740 153 / 5e-45 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.016G017600 [exp] 91 / 6e-21 AT3G02960 199 / 2e-64 Heavy metal transport/detoxification superfamily protein (.1) Potri.012G007300 [exp] 92 / 1e-20 AT5G24580 251 / 5e-82 Heavy metal transport/detoxification superfamily protein (.1.2.3) Potri.006G006100 [exp] 90 / 3e-20 AT5G50740 143 / 2e-41 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.015G003900 [exp] 91 / 6e-20 AT5G24580 247 / 1e-80 Heavy metal transport/detoxification superfamily protein (.1.2.3) Potri.015G099500 [exp] 88 / 5e-19 AT5G50740 214 / 7e-68 Heavy metal transport/detoxification superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10022617 pacid=23178674 polypeptide=Lus10022617 locus=Lus10022617.g ID=Lus10022617.BGIv1.0 annot-version=v1.0 ATGGCTGCCGGCGATCAGAAAGATGGAGGAGGAGAGAAGAAGCCTGCAGCAGTTGGCGGCGAGAAGAAGGATGACGCCGGCGGGAAGTCCCCTGTCACCG TCTTCAAGATGGATATGCATTGCGAAGGATGCGCGAAGAAGATCCGCCGCGCACTCAAGCACATGGACGGAGTGGAGTATGTGAAGACGGACTGTGAAAC CGATAAGCTTACAGTGACCGGGAAGGTGGATCCCGACAGGGTGAAATCGAGGATCGAGGAGAAGACTAAGAAGAAGGCGGAGATTGTTTCTCCTCAGCCG AAGAAGGACGGCGGCGGCGGTGGAACTGCTCCTGCCGGGGATAAGAAGGCCGGAGGAGGAGGAGGAGGAGCTTCGGATAAGAAGGCGGAGGAGAAGAAAC CGTCCCCGCCAAAAGAGAGTACGGTAGTGCTGAAGATCAGGACTCACTGTGATGGGTGCATTCACAAGATGAAGAAGATCATCAAGAAAACCTCAGGAGT TGCTAGCGTGGCGGTTGACGCTACAAAAGACTTGGTAACGGTGAAAGGAACAATGGACGTTAAGGAGCTGACGTCGTATTTAAAAGAGAAGCTGAAAAGA AACGTTGAAGTGGTCCCACCAACGCCGGCAGCTGCAAAGAAGGACTGCATGCCCGAATCATCAGGAGTTGCGAGCGTGGCGGTTGACGCTACAAAAGACT TGGTAACGGTGAAAGGAACAATGGACGTTAAGGAGCTGACGTCGTATTTAAAAGAGAAGCTGAAAAGAAACGTTGAAGTGGTCCCACCAACGCCGGCAGC TGCAAAGAAGGATGACGACAAGAAACCAGCTGCCCCCGCCGGCGGCGATAAGAAGGATAAGGAGAAGGAGAAGGGTAAAGAAGCGGCCGGTGGCGAGAAG AAGGAGAAAGAGAAGGAGAAAGGAAAAGAAGCAGGCGGCGGCGGAGGACAGGCGGGGAAGAAAGATGGAGACGGCGGTGGAAAGAAAGGAGACGCCGTCG CAGCTGCTCCGAAGACAGAAGTGAACAAAATGGAATACTATGGGTACTCGGCGGAGGCGGGATACTGGCCGGAAGAGTCGTATGGGGAGAGCAGCTACTA CGTGGAATCGCCACATCAGCACCACCACCAGTACTACAACATGGATCTGCATCAGCATCACTACAGTATGGATTCAGAAGAGCAGCATCACTACGTTATG GAGCCACAATACATCCAACAGGGCTACGCGCAATCTCAGTATACGCACGCGCCGCCTCCAATGGCGTCGGGGTACATGATGGAGGGTCACCACGCGCACC CTGGCCACGCACCGCAGTTCCTGAGCGACGATAATCCCAATGCATGCTCAGTGATGTGA
AA sequence Show only first row Show all	>Lus10022617 pacid=23178674 polypeptide=Lus10022617 locus=Lus10022617.g ID=Lus10022617.BGIv1.0 annot-version=v1.0 MAAGDQKDGGGEKKPAAVGGEKKDDAGGKSPVTVFKMDMHCEGCAKKIRRALKHMDGVEYVKTDCETDKLTVTGKVDPDRVKSRIEEKTKKKAEIVSPQP KKDGGGGGTAPAGDKKAGGGGGGASDKKAEEKKPSPPKESTVVLKIRTHCDGCIHKMKKIIKKTSGVASVAVDATKDLVTVKGTMDVKELTSYLKEKLKR NVEVVPPTPAAAKKDCMPESSGVASVAVDATKDLVTVKGTMDVKELTSYLKEKLKRNVEVVPPTPAAAKKDDDKKPAAPAGGDKKDKEKEKGKEAAGGEK KEKEKEKGKEAGGGGGQAGKKDGDGGGKKGDAVAAAPKTEVNKMEYYGYSAEAGYWPEESYGESSYYVESPHQHHHQYYNMDLHQHHYSMDSEEQHHYVM EPQYIQQGYAQSQYTHAPPPMASGYMMEGHHAHPGHAPQFLSDDNPNACSVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36950			Heavy metal transport/detoxifi...		Lus10022617 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000611 [exp]	1.4	0.9770
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10006463 [exp]	3.5	0.9707
AT2G23790			Protein of unknown function (D...		Lus10016799 [exp]	3.5	0.9735
AT5G36930			Disease resistance protein (TI...		Lus10007821 [exp]	4.9	0.9708
AT1G06840			Leucine-rich repeat protein ki...		Lus10034445 [exp]	4.9	0.9570
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Lus10024030 [exp]	5.0	0.9682
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10038940 [exp]	6.0	0.9618
AT5G61820			unknown protein		Lus10017316 [exp]	6.5	0.9654
AT3G51000			alpha/beta-Hydrolases superfam...		Lus10028340 [exp]	6.5	0.9579
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10040814 [exp]	6.7	0.9472

Compare expression of checked genes

Lus10022617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.