Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17030 115 / 3e-29 F-box family protein with a domain of unknown function (DUF295) (.1) AT2G17036 88 / 2e-19 F-box family protein with a domain of unknown function (DUF295) (.1) AT2G16365 59 / 1e-09 F-box family protein (.1.2.3.4) AT3G25750 58 / 2e-09 F-box family protein with a domain of unknown function (DUF295) (.1) AT1G65770 58 / 2e-09 AMR1 ascorbic acid mannose pathway regulator 1 (.1) AT5G60060 57 / 4e-09 Protein of unknown function (DUF295) (.1) AT1G44080 54 / 3e-08 F-box family protein with a domain of unknown function (DUF295) (.1) AT4G35733 52 / 2e-07 F-box family protein with a domain of unknown function (DUF295) (.1) AT2G26160 50 / 5e-07 F-box family protein with a domain of unknown function (DUF295) (.1) AT2G16300 46 / 1e-05 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021517 [exp] 482 / 2e-172 AT2G17030 166 / 2e-47 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10012519 [exp] 182 / 5e-56 AT2G17030 115 / 2e-29 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10025100 [exp] 144 / 8e-40 AT2G17030 335 / 4e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10023984 [exp] 143 / 1e-39 AT2G17030 336 / 2e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10041838 [exp] 86 / 1e-18 AT1G65770 147 / 2e-40 ascorbic acid mannose pathway regulator 1 (.1) Lus10028385 [exp] 64 / 3e-11 AT1G65770 116 / 4e-29 ascorbic acid mannose pathway regulator 1 (.1) Lus10022650 [exp] 49 / 1e-06 AT2G17030 96 / 4e-22 F-box family protein with a domain of unknown function (DUF295) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G179685 [exp] 116 / 2e-29 AT2G17030 360 / 2e-121 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.009G140000 [exp] 113 / 1e-28 AT2G17030 370 / 6e-126 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.005G105400 [exp] 84 / 2e-18 AT1G65770 148 / 8e-41 ascorbic acid mannose pathway regulator 1 (.1) Potri.005G105200 [exp] 71 / 2e-13 AT1G65770 132 / 4e-35 ascorbic acid mannose pathway regulator 1 (.1) Potri.005G105100 [exp] 59 / 7e-10 AT1G65770 135 / 3e-36 ascorbic acid mannose pathway regulator 1 (.1) Potri.001G277400 [exp] 56 / 1e-08 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022618 pacid=23178566 polypeptide=Lus10022618 locus=Lus10022618.g ID=Lus10022618.BGIv1.0 annot-version=v1.0 ATGGCGGACTGGTCTCGTGATCTCCCTAACGATCTACTGGACCGAATCGTCAACCTTCTCGACACCGATATCGACCTGCTCCGCTTCGCTTCCGTCTGCA GCTCGTGGCATTCCTCCGCCATCGGTGCTGCTCGTCGTCGTCGTTTAGCCACCGCGCTCCAAGTCCTCCCTACTGGCATCTCCGAGCGCACAATCTACCT CGTCGGCCCGCTGGACCAGGGCGGTTGGCTAGTTCAGGTTGCGGGCAGTAAGCACACTCTCTGCAGTAAGCGCCTGCTCCATCCTGTAACGAACAATCAT TTCAGTTACGACTCATTGCCAGAGAACATTCCTATGCTGGAATTTAGGGCTAAGGAATTGCATCATCTGTACATGCTGCAGAGCCTGGAAATCTCGGGTG GTACTGTACATGAGAAAAACAGGAAGCTGGCAGTGTTGTGGTGTGATGTTGACTCTGCCGAGAGTAGCGAATTCACGCTGCTTACCATTCGTATGGGAGG TCGATTCGCGAAATTTGAGAGTCTCAATCGGAAATGGACCTTGTTAGAGCACCATTGTTCCTTTGCAGATGTGATAGTTCATAAGGGTAAGTTGTTTGGT CTTGATTCCGACGGTGAGTTGTTTGGTGTCGATTCCACTGGGAAATTGGTGCTGGCTGCGGCTGCTAGATGTGGAATGCCAGGTAGCAAGAAGTGTTTGG TTCACTCCACGGATGGTGAATTGCTGGCAGTGGAGATGTATTACTTTGAATGTGATTATCCTGACTATATTGAGTTGATTGAGTCCACAGGGTGTGAATT GATATCGTCGAGAGGAAGAGGAAAACAGAGAGAAGTGAAGAAGAATTTCTTACTTTCATTGAAGGTGCAATAG
AA sequence Show only first row Show all	>Lus10022618 pacid=23178566 polypeptide=Lus10022618 locus=Lus10022618.g ID=Lus10022618.BGIv1.0 annot-version=v1.0 MADWSRDLPNDLLDRIVNLLDTDIDLLRFASVCSSWHSSAIGAARRRRLATALQVLPTGISERTIYLVGPLDQGGWLVQVAGSKHTLCSKRLLHPVTNNH FSYDSLPENIPMLEFRAKELHHLYMLQSLEISGGTVHEKNRKLAVLWCDVDSAESSEFTLLTIRMGGRFAKFESLNRKWTLLEHHCSFADVIVHKGKLFG LDSDGELFGVDSTGKLVLAAAARCGMPGSKKCLVHSTDGELLAVEMYYFECDYPDYIELIESTGCELISSRGRGKQREVKKNFLLSLKVQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17030			F-box family protein with a do...		Lus10022618 [exp]	0	1
					Lus10003695 [exp]	5.6	0.7407
					Lus10003774 [exp]	7.9	0.7407
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10005596 [exp]	9.6	0.7407
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10014436 [exp]	11.1	0.7407
AT2G14830			Regulator of Vps4 activity in ...		Lus10018577 [exp]	12.1	0.6527
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10015428 [exp]	12.4	0.7407
					Lus10033071 [exp]	13.6	0.7407
AT5G53820			Late embryogenesis abundant pr...		Lus10007566 [exp]	14.7	0.7407
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10008978 [exp]	15.7	0.7407
AT3G55700			UDP-Glycosyltransferase superf...		Lus10040724 [exp]	16.7	0.7407

Compare expression of checked genes

Lus10022618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.