Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03415 362 / 2e-124 E2F_DP ATDPB, DPB Transcription factor DP (.1.2) AT5G02470 234 / 6e-76 E2F_DP DPA Transcription factor DP (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014423 [exp] 410 / 1e-143 AT5G03415 404 / 1e-140 Transcription factor DP (.1.2) Lus10023926 [exp] 408 / 5e-143 AT5G03415 409 / 2e-142 Transcription factor DP (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G124200 [exp] 432 / 2e-152 AT5G03415 392 / 1e-135 Transcription factor DP (.1.2) Potri.016G093200 [exp] 427 / 7e-151 AT5G03415 371 / 1e-127 Transcription factor DP (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF02319 [flax] [poplar] E2F_TDP E2F/DP family winged-helix DNA-binding domain CL0123 [flax] [poplar] PF08781 [flax] [poplar] DP Transcription factor DP
Representative CDS sequence Show only first row Show all	>Lus10022620 pacid=23178653 polypeptide=Lus10022620 locus=Lus10022620.g ID=Lus10022620.BGIv1.0 annot-version=v1.0 ATGGCGCCTGGCGGCACAACCACCGCGTCAGGCGGCGGACAATCGGTGTCGACGAGTGGAAGCGTCGGATCTCCGTCTAGCCAGGCCGTCTTTGTCACCA CTCCGGCGAGCGACATCACTCACATCCGCCTCAACCATCTCGACATCCACGCCGACGACTCCGCTACTACGCAAGATGCCGCCGCCGATAACAAGAAGAA AAAAAGGGGTCAACGGGCAGTGGGAGCTGATAAGAGCGGTAGAGGGCTGCGCCAATTCAGCATGAAAGTTTGTGAGAAGGTAGAAAGCAAAGGGAGTACC ACTTACAACGAGGTGGCAGATGAACTTGTAGCAGAGTTTGCTGATCCCAGTAGCAATCTTGCAGTCCCGGACCAGCCCCAGTTTGACGAGAAAAACATAC GGCGGAGGGTGTATGATGCCTTGAATGTTCTCATGGCTTTAGATATCATATCTAAAGACAAGAAAGAAATACACTGGAAAGGCCTTCCGCGGACCAATCT AAGCGACATTGACGAGATTAAGGCTGAGCGGCTTTCAGCAAGAAATAGGACTGAAAAGAAAGCTCACTATTTACAGGAACTGGAAGATCAATTTTCAGCG CTGGAGATCTTAATCCGGCGGAATGAGGCACTATATAGCTCTGGTAATGCTCCGAGTGGGGGAGTTTCGCTGCCATTTATTCTGGTTCAGACTCGCCCCC ATGCAACTGTCGAAGTAGAAATATCGGAGGACATGCAGCTCGTTCATTTCGACTTCAATAGCACCCCCTTCGAGCTCCACGACGATAACTATGTCCTGAA AGCGATGAAGCTCCTGCAGCTATCAGACAACAATGGACAGACTACGAACATGGTAGTCAACGTAGATGAAGGATCTAGCATGCACCAGCACCAGCACCAG CACCAGTTGCTTCCTCCAGCTTCGCCTCCGATTCCCGGGATCATAAAAGCAAGGGTGAAGCATGAACATTGA
AA sequence Show only first row Show all	>Lus10022620 pacid=23178653 polypeptide=Lus10022620 locus=Lus10022620.g ID=Lus10022620.BGIv1.0 annot-version=v1.0 MAPGGTTTASGGGQSVSTSGSVGSPSSQAVFVTTPASDITHIRLNHLDIHADDSATTQDAAADNKKKKRGQRAVGADKSGRGLRQFSMKVCEKVESKGST TYNEVADELVAEFADPSSNLAVPDQPQFDEKNIRRRVYDALNVLMALDIISKDKKEIHWKGLPRTNLSDIDEIKAERLSARNRTEKKAHYLQELEDQFSA LEILIRRNEALYSSGNAPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKLLQLSDNNGQTTNMVVNVDEGSSMHQHQHQ HQLLPPASPPIPGIIKARVKHEH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10022620 [exp]	0	1
AT3G10540			3-phosphoinositide-dependent p...		Lus10038647 [exp]	1.7	0.8438
					Lus10019266 [exp]	5.8	0.7667
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10028635 [exp]	7.9	0.8221
AT2G26550		HO2	heme oxygenase 2 (.1.2.3)		Lus10042666 [exp]	9.1	0.7433
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10000295 [exp]	12.0	0.7467
AT1G06590			unknown protein		Lus10034176 [exp]	14.1	0.8270
AT1G49980			DNA/RNA polymerases superfamil...		Lus10020986 [exp]	14.5	0.8017
AT2G32000			DNA topoisomerase, type IA, co...		Lus10021692 [exp]	18.8	0.7827
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Lus10038518 [exp]	19.0	0.7930
AT3G46980		PHT4;3	phosphate transporter 4;3 (.1....		Lus10040703 [exp]	23.2	0.7093

Compare expression of checked genes

Lus10022620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.