Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76350 212 / 3e-60 NLP5 Plant regulator RWP-RK family protein (.1) AT4G35270 191 / 2e-52 NLP2 Plant regulator RWP-RK family protein (.1) AT2G17150 182 / 3e-50 NLP1 Plant regulator RWP-RK family protein (.1.2) AT1G20640 179 / 2e-48 NLP4 Plant regulator RWP-RK family protein (.1.2) AT4G38340 158 / 2e-41 NLP3 Plant regulator RWP-RK family protein (.1) AT4G24020 157 / 8e-41 NLP7 NIN like protein 7 (.1) AT1G64530 149 / 3e-38 NLP6 Plant regulator RWP-RK family protein (.1) AT3G59580 136 / 7e-34 NLP9 Plant regulator RWP-RK family protein (.1.2) AT2G43500 123 / 2e-29 NLP8 Plant regulator RWP-RK family protein (.1.2) AT4G35590 53 / 2e-07 RKD5 RWP-RK domain-containing 5, RWP-RK domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023930 [exp] 273 / 7e-83 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10014428 [exp] 268 / 6e-81 AT4G35270 659 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10030744 [exp] 206 / 1e-58 AT1G20640 427 / 1e-138 Plant regulator RWP-RK family protein (.1.2) Lus10013224 [exp] 202 / 4e-57 AT1G20640 600 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10014429 [exp] 191 / 3e-56 AT1G20640 132 / 7e-34 Plant regulator RWP-RK family protein (.1.2) Lus10023931 [exp] 190 / 5e-56 AT2G17150 164 / 6e-45 Plant regulator RWP-RK family protein (.1.2) Lus10032423 [exp] 169 / 2e-46 AT1G64530 323 / 6e-101 Plant regulator RWP-RK family protein (.1) Lus10012257 [exp] 168 / 2e-44 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10016018 [exp] 166 / 4e-44 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G166932 [exp] 215 / 7e-61 AT4G35270 874 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.004G205500 [exp] 213 / 4e-60 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.002G009700 [exp] 193 / 2e-53 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.016G042900 [exp] 191 / 2e-52 AT4G35270 572 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.005G251700 [exp] 186 / 7e-51 AT4G35270 739 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166666 [exp] 183 / 7e-50 AT4G35270 702 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166400 [exp] 183 / 1e-49 AT4G35270 730 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.003G143000 [exp] 174 / 1e-46 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.001G087900 [exp] 171 / 2e-45 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.009G087500 [exp] 154 / 5e-41 AT4G35270 301 / 5e-92 Plant regulator RWP-RK family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02042 [flax] [poplar] RWP-RK RWP-RK domain CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10022621 pacid=23178535 polypeptide=Lus10022621 locus=Lus10022621.g ID=Lus10022621.BGIv1.0 annot-version=v1.0 ATGATTCAGTCAACCATGGATGATGATAAAGACACAGGCTTTGCACCCACCGCCATGGATTTCGATTTCATGGATCAATTCCTCGACGAAGAATGGCTGA TTGGAACTGACGAATCCAACAACGATCCAAATGAAACGGTGCCGTATTCAATCAAGGAGAGACTGGAAAACGCAATCAACAAATGGAAAGAATCCACAGA AGAACACTACAGAGATGTTCTTGTGCAGATATGGATGCCTATAGACGAACATGTCCTTACAACCAAAGGCCAACCTTACTTCCTCACTCCATTGTCCATC AACCTTGCAAGCTACAGAGATGTCTCCAAGGCCTTTCGAGCCGACTTGCGATCCAAGGAGTTTCTCGGGCTGCCCGGTCGAGTTTTCTTGGCCAAGTTCC CCGAATGGACGCCTGATGTTCGTTACTTCAAATCCGAGGAGTATCCTCGCAGAAGCTTTGCGGCTCAGTATAGCATCAGTGGCTCTCTTGCATTCCCGGT TTTCGAGCGTGGTGGCTTCGGGGCTTGCTTGGGGGTTGTTGAGGTTGTCACCATGACTCGGGATATCGAGTACCGGCCTGAGCTCGAACGAGTCTGCAAA GCTCTTGAGGCTGTCGATTTACGCAGCTCGGAGGACTTCATACCCCCTAGTGTGAAGGGTTGTAAGGAGTTCTATCAATCTGTGATGGAGAAGGAGAATT ATCAGGAAGAGCCATCTTGGATCAGCCGATTTATGGAGGGTCATAGGGAAGGTGGCAGTTACTTGGAGAAAACTCCTCGAAACGAGGTGGAACCTATCGT GAACCGGGGATCTAGCAGTAGTAGGGCGAACGAAAAGAGACGGGCCAAACTGGAGAAGACAGTGAGCTTGGATGTACTAAGGCAGTACTTTGCTGGGAAC CTTAAAGATGCTGCCAAGAATCTTGGTGTGTGCCCTACTACTTTGAAAAGGATATGCAGGTCATACGGAATCAACCGATGGCCGTCTCGAAAGATCAAGA AAGTTGGCCACACTTTGAAGAAGCTCCAGCTCGTAATCGATTCGGTCCACGGTGCAGAAGGTTCCATCCAAATTAGTTCCTTCTACACTGCTTTCCCTGA CCTGAACCATTCCGGAAATGAAACCTCTCAGCAAGTAAGCCCTCCTCAGAGCTCCAACTGTAGCTCGTGTAAAGAAGAAGATCATGGCGGTGCCTTTGGA GTTAAAGCTTCGTTCGGTGAAGAGAAGGCCCGGTTCAGCTTGCCATCGAGCTGGGGGTTCGAGGATTTGATGCGAGAGGTTCTGCATCGGTTCAACGTAG ACGAAAAGTCGTGCAGAGTTGATCTCAAGTACTTGGACGATGATCATGAGTGGGTTCTCTTGACTTGTGATGCCGATCTCGAGGAATGTAAAGACGTTTG CAGGTCTGAACAGCGCCATATGATCGAACTCTCACTGCATCAATCGCAATTCACGAGTGTACTAGCCAAAACCGGGCAGCAGCGTAACAACAATGGACAG ACGAGTGGTTAG
AA sequence Show only first row Show all	>Lus10022621 pacid=23178535 polypeptide=Lus10022621 locus=Lus10022621.g ID=Lus10022621.BGIv1.0 annot-version=v1.0 MIQSTMDDDKDTGFAPTAMDFDFMDQFLDEEWLIGTDESNNDPNETVPYSIKERLENAINKWKESTEEHYRDVLVQIWMPIDEHVLTTKGQPYFLTPLSI NLASYRDVSKAFRADLRSKEFLGLPGRVFLAKFPEWTPDVRYFKSEEYPRRSFAAQYSISGSLAFPVFERGGFGACLGVVEVVTMTRDIEYRPELERVCK ALEAVDLRSSEDFIPPSVKGCKEFYQSVMEKENYQEEPSWISRFMEGHREGGSYLEKTPRNEVEPIVNRGSSSSRANEKRRAKLEKTVSLDVLRQYFAGN LKDAAKNLGVCPTTLKRICRSYGINRWPSRKIKKVGHTLKKLQLVIDSVHGAEGSIQISSFYTAFPDLNHSGNETSQQVSPPQSSNCSSCKEEDHGGAFG VKASFGEEKARFSLPSSWGFEDLMREVLHRFNVDEKSCRVDLKYLDDDHEWVLLTCDADLEECKDVCRSEQRHMIELSLHQSQFTSVLAKTGQQRNNNGQ TSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17150		NLP1	Plant regulator RWP-RK family ...		Lus10022621 [exp]	0	1
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10003295 [exp]	5.7	0.7946
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10002311 [exp]	14.5	0.7938
AT2G48020			Major facilitator superfamily ...		Lus10008182 [exp]	15.2	0.7425
AT5G62960			unknown protein		Lus10027692 [exp]	15.3	0.7688
AT4G33620			Cysteine proteinases superfami...		Lus10020445 [exp]	16.2	0.7870
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10018009 [exp]	18.1	0.7670
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10018153 [exp]	18.2	0.7543
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10037080 [exp]	21.2	0.7567
AT5G01450			RING/U-box superfamily protein...		Lus10002487 [exp]	21.3	0.7752
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10015456 [exp]	24.1	0.7742

Compare expression of checked genes

Lus10022621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.