Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38280 103 / 2e-28 unknown protein AT2G45250 100 / 6e-27 Integral membrane protein hemolysin-III homolog (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003319 [exp] 211 / 1e-70 AT2G45250 85 / 1e-20 Integral membrane protein hemolysin-III homolog (.1.2) Lus10023933 [exp] 144 / 6e-43 AT2G45250 106 / 4e-28 Integral membrane protein hemolysin-III homolog (.1.2) Lus10014432 [exp] 141 / 8e-42 AT2G45250 103 / 3e-27 Integral membrane protein hemolysin-III homolog (.1.2) Lus10022623 [exp] 46 / 7e-07 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G166100 [exp] 120 / 4e-34 AT4G38280 106 / 4e-28 unknown protein Potri.004G205200 [exp] 115 / 4e-32 AT4G38280 100 / 6e-26 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022622 pacid=23178615 polypeptide=Lus10022622 locus=Lus10022622.g ID=Lus10022622.BGIv1.0 annot-version=v1.0 ATGGATGCTCATACCTTCAAGGTCTCCGGCACCAAGAGACCCTCCCCCGAGCAGTCTCCGAATAGCAATGCAGCTGCAAATGCTCAACAACTCGTCTATG TTCGTAGGAAATCCGAAACCGAAATGAATCATCAACAACTGCTCAGTCACTTTTCGGATAAGGATTCAAAAGTTCCTCGATTTTCGGCCTTTGCACCTAT TGGCAAGCCGAAACGTGTGCATTGGGAGGAACGATATCGACAGTTGCAAGTTTTGTTGAAGAAGCAAGATGAAACAGATCATCAGGACTACATCCAAATG CTTCGATCGATCTCCTTTGTTGAGCTTAGTAGACACGCTATTGAGTTGGAGAAACGATCCATTCAGCTCTCTTTTGAAGAAGCAAAGGAGATACAGCGGG TGGCATATCTGAACGTACTGGGGAGGAATCTGAGACCAACCTTCTCAGTTCAGCAACAGCTTCTTCCTCCGAGGAAATGA
AA sequence Show only first row Show all	>Lus10022622 pacid=23178615 polypeptide=Lus10022622 locus=Lus10022622.g ID=Lus10022622.BGIv1.0 annot-version=v1.0 MDAHTFKVSGTKRPSPEQSPNSNAAANAQQLVYVRRKSETEMNHQQLLSHFSDKDSKVPRFSAFAPIGKPKRVHWEERYRQLQVLLKKQDETDHQDYIQM LRSISFVELSRHAIELEKRSIQLSFEEAKEIQRVAYLNVLGRNLRPTFSVQQQLLPPRK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38280			unknown protein		Lus10022622 [exp]	0	1
					Lus10022623 [exp]	1.0	0.8180
AT3G52040			unknown protein		Lus10005332 [exp]	4.2	0.7392
AT4G38370			Phosphoglycerate mutase family...		Lus10023935 [exp]	13.5	0.7213
AT1G69630			F-box/RNI-like superfamily pro...		Lus10029588 [exp]	14.3	0.7100
					Lus10019128 [exp]	15.5	0.7274
AT1G25260			Ribosomal protein L10 family p...		Lus10001072 [exp]	16.8	0.7510
AT1G69630			F-box/RNI-like superfamily pro...		Lus10006319 [exp]	22.2	0.7307
AT3G52050			5'-3' exonuclease family prote...		Lus10035938 [exp]	26.1	0.7146
					Lus10024086 [exp]	33.8	0.6959
AT5G53080			Tetratricopeptide repeat (TPR)...		Lus10005905 [exp]	36.1	0.7042

Compare expression of checked genes

Lus10022622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.