Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04740 53 / 1e-08 CPK23, ATCPK23 calcium-dependent protein kinase 23 (.1.2) AT3G50360 50 / 4e-08 CEN1, ATCEN2 CENTRIN 1, centrin2 (.1) AT5G12180 49 / 3e-07 CPK17 calcium-dependent protein kinase 17 (.1) AT5G19360 49 / 5e-07 CPK34 calcium-dependent protein kinase 34 (.1) AT3G51850 47 / 2e-06 CPK13 calcium-dependent protein kinase 13 (.1) AT4G04695 47 / 3e-06 CPK31 calcium-dependent protein kinase 31 (.1) AT1G50700 46 / 5e-06 CPK33 calcium-dependent protein kinase 33 (.1) AT4G04700 46 / 5e-06 CPK27 calcium-dependent protein kinase 27 (.1) AT4G04720 46 / 6e-06 CPK21 calcium-dependent protein kinase 21 (.1) AT5G19450 45 / 7e-06 CPK8, CDPK19 calcium-dependent protein kinase 19 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003320 [exp] 348 / 1e-124 AT3G50360 54 / 1e-08 CENTRIN 1, centrin2 (.1) Lus10025570 [exp] 51 / 1e-07 AT2G31500 768 / 0.0 calcium-dependent protein kinase 24 (.1) Lus10002075 [exp] 50 / 2e-07 AT4G04720 536 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10036050 [exp] 50 / 3e-07 AT5G19360 908 / 0.0 calcium-dependent protein kinase 34 (.1) Lus10021248 [exp] 50 / 3e-07 AT3G10660 809 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10000889 [exp] 49 / 4e-07 AT5G12180 907 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10006777 [exp] 49 / 7e-07 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10013603 [exp] 49 / 8e-07 AT3G10660 803 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10027032 [exp] 48 / 1e-06 AT2G31500 765 / 0.0 calcium-dependent protein kinase 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G165700 [exp] 290 / 6e-102 AT5G04870 57 / 8e-10 calcium dependent protein kinase 1 (.1) Potri.004G204700 [exp] 287 / 1e-100 AT5G12180 61 / 2e-11 calcium-dependent protein kinase 17 (.1) Potri.005G138000 [exp] 52 / 1e-08 AT3G50360 275 / 4e-96 CENTRIN 1, centrin2 (.1) Potri.016G117200 [exp] 53 / 2e-08 AT3G51850 982 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.009G069200 [exp] 51 / 7e-08 AT5G12180 914 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.006G101300 [exp] 50 / 2e-07 AT3G51850 977 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.002G088500 [exp] 48 / 4e-07 AT1G24620 99 / 2e-26 EF hand calcium-binding protein family (.1) Potri.003G134000 [exp] 49 / 5e-07 AT4G23650 776 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.001G097400 [exp] 49 / 6e-07 AT4G23650 781 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.002G017000 [exp] 46 / 5e-06 AT1G76040 758 / 0.0 calcium-dependent protein kinase 29 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10022624 pacid=23178624 polypeptide=Lus10022624 locus=Lus10022624.g ID=Lus10022624.BGIv1.0 annot-version=v1.0 ATGGAGAACACAGCGATGCTGAGAGAGTGGTTCGACCGAGTCGACTCAGAAAGAATCGGAAGCGTCACTGCAACTCAGCTGAAGAGTGCTTTAGCTGTTG GCAACCTTGAATTCCCTCTCTCAGTTGTTCAACAAATGATCAGGATGTATGATTTTGACAGAAATGGGACTATGAGCTTTGATGAATTTGTTGCATTGAA CAAGTTCCTCATAAAGGTTGGATCTTTCTCCTTTCAATTGGTTTCCATGCTGGTTCAACAAGCCTTCTCAGACCTAGAGAGGGATCGTGGCTATCTTGTT CCCGATGATGTGTACGAGGGATTGGTGAAACTTGGTTTCTCTCTCGACTCGCCAGCTTTCTACACGGTGTGCGAGAGCTTTGATCAGAAGAAGAATGGGA AGTTTCGTCTGGATGACTTCATATCTCTTTGTATCTTTGTACAGTCTGCAAGGAACCTTTTCGAATCGTTTGATACAGTGAAGCAAGGAAGGATTAGTCT TGATATGAACCAGTTCATATACTGCAGTAAGTAA
AA sequence Show only first row Show all	>Lus10022624 pacid=23178624 polypeptide=Lus10022624 locus=Lus10022624.g ID=Lus10022624.BGIv1.0 annot-version=v1.0 MENTAMLREWFDRVDSERIGSVTATQLKSALAVGNLEFPLSVVQQMIRMYDFDRNGTMSFDEFVALNKFLIKVGSFSFQLVSMLVQQAFSDLERDRGYLV PDDVYEGLVKLGFSLDSPAFYTVCESFDQKKNGKFRLDDFISLCIFVQSARNLFESFDTVKQGRISLDMNQFIYCSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04740		CPK23, ATCPK23	calcium-dependent protein kina...		Lus10022624 [exp]	0	1
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10021624 [exp]	2.6	0.9368
AT1G68940			Armadillo/beta-catenin-like re...		Lus10029113 [exp]	3.5	0.9307
AT4G10920		KELP	transcriptional coactivator p1...		Lus10023061 [exp]	3.9	0.9293
AT4G22310			Uncharacterised protein family...		Lus10011790 [exp]	4.0	0.9298
AT4G06676			unknown protein		Lus10019950 [exp]	4.2	0.9253
AT4G27120			unknown protein		Lus10011161 [exp]	5.2	0.9298
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10014363 [exp]	6.9	0.9209
AT4G20330			Transcription initiation facto...		Lus10002233 [exp]	7.7	0.9135
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10019897 [exp]	8.7	0.8858
AT3G58170		ATBET11, ATBS14...	ARABIDOPSIS THALIANA BET1P/SFT...		Lus10033868 [exp]	9.9	0.9202

Compare expression of checked genes

Lus10022624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.