Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38360 274 / 4e-93 LAZ1 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) AT1G77220 195 / 2e-60 Protein of unknown function (DUF300) (.1) AT1G23070 144 / 1e-41 Protein of unknown function (DUF300) (.1) AT5G26740 61 / 6e-11 Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2), Protein of unknown function (DUF300) (.3) AT3G05940 58 / 4e-10 Protein of unknown function (DUF300) (.1) AT4G21570 50 / 2e-07 Protein of unknown function (DUF300) (.1) AT1G11200 45 / 9e-06 Protein of unknown function (DUF300) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003321 [exp] 313 / 1e-107 AT4G38360 321 / 2e-106 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Lus10018920 [exp] 188 / 4e-58 AT1G77220 316 / 5e-104 Protein of unknown function (DUF300) (.1) Lus10028621 [exp] 186 / 6e-57 AT1G77220 316 / 2e-103 Protein of unknown function (DUF300) (.1) Lus10035832 [exp] 117 / 9e-32 AT1G23070 205 / 6e-63 Protein of unknown function (DUF300) (.1) Lus10036614 [exp] 116 / 1e-31 AT1G23070 184 / 2e-55 Protein of unknown function (DUF300) (.1) Lus10001058 [exp] 59 / 3e-10 AT3G05940 675 / 0.0 Protein of unknown function (DUF300) (.1) Lus10001426 [exp] 59 / 3e-10 AT3G05940 674 / 0.0 Protein of unknown function (DUF300) (.1) Lus10018447 [exp] 46 / 5e-06 AT4G21570 464 / 1e-166 Protein of unknown function (DUF300) (.1) Lus10011236 [exp] 39 / 0.0005 AT4G21570 216 / 1e-71 Protein of unknown function (DUF300) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G204600 [exp] 294 / 1e-98 AT4G38360 713 / 0.0 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Potri.009G165600 [exp] 284 / 1e-94 AT4G38360 717 / 0.0 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Potri.002G071400 [exp] 189 / 5e-58 AT1G77220 753 / 0.0 Protein of unknown function (DUF300) (.1) Potri.005G188200 [exp] 189 / 9e-58 AT1G77220 756 / 0.0 Protein of unknown function (DUF300) (.1) Potri.018G062600 [exp] 154 / 3e-45 AT1G23070 522 / 0.0 Protein of unknown function (DUF300) (.1) Potri.005G000600 [exp] 62 / 2e-11 AT3G05940 622 / 0.0 Protein of unknown function (DUF300) (.1) Potri.001G405700 [exp] 51 / 1e-07 AT4G21570 421 / 2e-149 Protein of unknown function (DUF300) (.1) Potri.011G044200 [exp] 50 / 3e-07 AT1G11200 395 / 1e-139 Protein of unknown function (DUF300) (.1) Potri.004G035900 [exp] 47 / 2e-06 AT1G11200 436 / 1e-155 Protein of unknown function (DUF300) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03619 [flax] [poplar] Solute_trans_a Organic solute transporter Ostalpha
Representative CDS sequence Show only first row Show all	>Lus10022625 pacid=23178677 polypeptide=Lus10022625 locus=Lus10022625.g ID=Lus10022625.BGIv1.0 annot-version=v1.0 ATGAGGCATCTCGGGGATCTCTTATCCTATTTGGGTTACTCGCCTCCAATATGGGCGTCTTTGATTGGTGGTGCTTTCATGGCGCTAAGCCTCTCATTGT CTTGCTACCTCTTGCTCGAACACCTCTCTGCTTACAAGAATCCTGAGGAGCAGAAGTTTTTGATTGGGGTTATTCTTATGGTTCCCTTTTATGCAATCGA ATCTTTTATATCGTTGGTGCATCCATCAATAAGTGTTGATGTTGGAATCTTAAGGGATTGCTATGAGTCATTTGCCATGTATTGCTTTGGGAGGTACCTT GTTGCTTGCTTAGGCGGAGAAGAAAGAGCGATTGAGTTCATGGACAGGCAAGGGCGTGCTAGCACGAAGACTCCGCTTCTAGAACATAAAAAAGACAAGG GAACCGTGAAGCACCCTTTCCCAATGAATTACTTCTTAAAGCCATGGCGACTTGGTCGGTGGTTCTATCAAATTGTGAAGTTTGGCATTGTTCAATATAT GATTATTAAGGCTTTCACTTCAATTTTGACCGTTGTTTTCGAAGCTTTTGGAGTTTACTGTGAAGGAGAGTTCAAATGGGACTGCGGGTAA
AA sequence Show only first row Show all	>Lus10022625 pacid=23178677 polypeptide=Lus10022625 locus=Lus10022625.g ID=Lus10022625.BGIv1.0 annot-version=v1.0 MRHLGDLLSYLGYSPPIWASLIGGAFMALSLSLSCYLLLEHLSAYKNPEEQKFLIGVILMVPFYAIESFISLVHPSISVDVGILRDCYESFAMYCFGRYL VACLGGEERAIEFMDRQGRASTKTPLLEHKKDKGTVKHPFPMNYFLKPWRLGRWFYQIVKFGIVQYMIIKAFTSILTVVFEAFGVYCEGEFKWDCG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38360		LAZ1	LAZARUS 1, Protein of unknown ...		Lus10022625 [exp]	0	1
AT1G63500			Protein kinase protein with te...		Lus10008530 [exp]	6.6	0.8776
AT1G60995			unknown protein		Lus10033791 [exp]	10.0	0.8680
AT4G27290			S-locus lectin protein kinase ...		Lus10014808 [exp]	20.3	0.8543
AT3G59660			C2 domain-containing protein /...		Lus10027067 [exp]	25.0	0.8591
AT2G38610			RNA-binding KH domain-containi...		Lus10034443 [exp]	27.0	0.8389
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10020962 [exp]	27.7	0.8644
AT2G35610		XEG113	xyloglucanase 113 (.1)		Lus10027804 [exp]	37.7	0.8218
AT1G70160			unknown protein		Lus10010721 [exp]	41.4	0.8511
AT4G34280			transducin family protein / WD...		Lus10013890 [exp]	52.9	0.8261
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10026327 [exp]	55.5	0.8076

Compare expression of checked genes

Lus10022625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.