Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36780 306 / 5e-100 UDP-Glycosyltransferase superfamily protein (.1) AT2G36760 304 / 3e-99 UGT73C2 UDP-glucosyl transferase 73C2 (.1) AT2G36800 303 / 1e-98 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G36750 297 / 1e-96 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT2G36770 294 / 3e-95 UDP-Glycosyltransferase superfamily protein (.1) AT2G36790 289 / 2e-93 UGT73C6 UDP-glucosyl transferase 73C6 (.1) AT3G53160 280 / 1e-89 UGT73C7 UDP-glucosyl transferase 73C7 (.1) AT3G53150 270 / 6e-86 UGT73D1 UDP-glucosyl transferase 73D1 (.1) AT4G34131 224 / 2e-68 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT2G15480 219 / 2e-66 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003323 [exp] 548 / 0 AT2G36800 493 / 2e-171 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) Lus10016268 [exp] 466 / 3e-162 AT2G36780 498 / 1e-173 UDP-Glycosyltransferase superfamily protein (.1) Lus10012011 [exp] 429 / 4e-148 AT2G36780 488 / 8e-170 UDP-Glycosyltransferase superfamily protein (.1) Lus10003322 [exp] 410 / 2e-140 AT2G36780 468 / 9e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10014437 [exp] 393 / 1e-133 AT2G36780 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10023893 [exp] 310 / 2e-101 AT2G36780 495 / 1e-172 UDP-Glycosyltransferase superfamily protein (.1) Lus10014403 [exp] 295 / 6e-96 AT2G36780 506 / 6e-177 UDP-Glycosyltransferase superfamily protein (.1) Lus10023939 [exp] 274 / 2e-87 AT2G36780 485 / 7e-169 UDP-Glycosyltransferase superfamily protein (.1) Lus10014404 [exp] 267 / 1e-84 AT2G36760 507 / 4e-177 UDP-glucosyl transferase 73C2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048700 [exp] 317 / 2e-104 AT2G36800 550 / 0.0 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) Potri.006G120600 [exp] 295 / 1e-95 AT3G53150 617 / 0.0 UDP-glucosyl transferase 73D1 (.1) Potri.016G097400 [exp] 281 / 8e-90 AT3G53150 626 / 0.0 UDP-glucosyl transferase 73D1 (.1) Potri.001G303700 [exp] 255 / 2e-80 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303000 [exp] 252 / 3e-79 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303600 [exp] 251 / 1e-78 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303300 [exp] 250 / 2e-78 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.009G098966 [exp] 248 / 2e-77 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G302400 [exp] 240 / 2e-74 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.009G098400 [exp] 236 / 7e-73 AT2G15490 505 / 8e-177 UDP-glycosyltransferase 73B4 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022628 pacid=23178591 polypeptide=Lus10022628 locus=Lus10022628.g ID=Lus10022628.BGIv1.0 annot-version=v1.0 ATGGGTTCACTAACCACAACCACTAGTACTACTCAACACCTTCATTTCGTGCTCTTCCCATTGATGGCACAAGGCCATATGATTCCCATGGTCGACATCG TCAAGCTCCTCACGAGCCGAGGGGTCGTGGTCACGATAGTTACCACCCCGCTCAACGCTGCCCGGTTCCGATCCTCTCTGAATCGCGCCATCGATGAATT AGGCCTCTTGATCAACCTCGTCGAGCTACCCTTCCCCTGTGTCGAAGCAGGGCTCCCAGAAGTCTGCGAGAACGTGGATATGCTCCTGTCATTCGAATCT TATCTTGGCCTCATGATGAAGGCCGCGGCCATGATGGAGCCACATGTCGAGACCCTGTTCGAAAACATGAGGGTAAAACCCGCTTGCATCATCTCAGATT TTGGCTTGCCGCTCAACGAGGACGATATAGTGCAGAGCGCGAGCTCGTCTGCTAATGAATATTTCATCGTCCCTGGACTGCCCGGGGAAATCAAGTTCAC CAAGGAACAATGGCCGTTACGAATCAGGGAGACTGGACATGACGAGTTTCAAGATTCTAAGAAGAAAGCGGAGTCAGAAGTGTACGGTGTGATCGTGAAC AGCTTTGAAGAACTCGAGTTGGAGTACTTCTCGGGTTACGAGGACTCGAAACGGGGCAAAGTATGGTGCGTCGGACCAGTTTCCTTAACCAATCTCCACG AATTGGACAAATTACAAAGAGGGAACGAGAAAATCTCTCTCTCGCACCATTGCCACGATTGGCTAAACAATAAAGAACCCGAGTCCGTCCTCTATGTCTG CTTAGGCTCAATATGCAACCTCTCGTCTCAGCCGCTGATGGAGCTGGCACTGGATTTCGAGGCCTCAGGAAAGCCCTTCATATGGGCTTTCCGCGAGACG GAGATCACATATGAGATCTACAAATGGATTGTGGATGATGGATACGAGGAAAGGGTAGCGGGGAGAGGGCTAGTGATTCGAGGGTGGGTCCCTCAGTGCA GGGATTCCCTTATGTGGCCATTTTTCACAGACCAGTTCAGCAATAAGAAGTTGATCGTGGAGGTGTTGAGGATCGTAGTGAAGGTTGGGGCAGAGAGACC GACGTTTTTCATGAAAGGAAATGAAGACACTGAGGTGAGCGTGAGGAGAGGAGATGTACATGGAGAGAGCGGTGAGGTTGGTGATGGAGGAGAGCGGCGA GGAAGGAGATGA
AA sequence Show only first row Show all	>Lus10022628 pacid=23178591 polypeptide=Lus10022628 locus=Lus10022628.g ID=Lus10022628.BGIv1.0 annot-version=v1.0 MGSLTTTTSTTQHLHFVLFPLMAQGHMIPMVDIVKLLTSRGVVVTIVTTPLNAARFRSSLNRAIDELGLLINLVELPFPCVEAGLPEVCENVDMLLSFES YLGLMMKAAAMMEPHVETLFENMRVKPACIISDFGLPLNEDDIVQSASSSANEYFIVPGLPGEIKFTKEQWPLRIRETGHDEFQDSKKKAESEVYGVIVN SFEELELEYFSGYEDSKRGKVWCVGPVSLTNLHELDKLQRGNEKISLSHHCHDWLNNKEPESVLYVCLGSICNLSSQPLMELALDFEASGKPFIWAFRET EITYEIYKWIVDDGYEERVAGRGLVIRGWVPQCRDSLMWPFFTDQFSNKKLIVEVLRIVVKVGAERPTFFMKGNEDTEVSVRRGDVHGESGEVGDGGERR GRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36780			UDP-Glycosyltransferase superf...		Lus10022628 [exp]	0	1
					Lus10001326 [exp]	3.6	1.0000
					Lus10026755 [exp]	5.3	1.0000
					Lus10016593 [exp]	6.3	1.0000
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10008511 [exp]	6.5	1.0000
AT2G43610			Chitinase family protein (.1)		Lus10020253 [exp]	8.4	1.0000
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10003277 [exp]	8.5	1.0000
AT3G13690			Protein kinase protein with ad...		Lus10020384 [exp]	9.5	1.0000
AT4G35220			Cyclase family protein (.1)		Lus10019823 [exp]	12.2	1.0000
					Lus10022172 [exp]	12.4	1.0000
AT2G38500			2-oxoglutarate (2OG) and Fe(II...		Lus10006093 [exp]	13.8	1.0000

Compare expression of checked genes

Lus10022628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.