Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41080 721 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 478 / 3e-159 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G23330 469 / 4e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G24000 467 / 9e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 452 / 8e-150 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G02010 454 / 2e-149 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 454 / 2e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 450 / 8e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03880 444 / 2e-148 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 446 / 4e-148 MEF22 mitochondrial editing factor 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003324 [exp] 1145 / 0 AT2G41080 597 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003325 [exp] 855 / 0 AT2G41080 570 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030908 [exp] 512 / 4e-167 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10016425 [exp] 493 / 2e-165 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030581 [exp] 503 / 1e-163 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10001617 [exp] 474 / 8e-160 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 459 / 9e-153 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036921 [exp] 453 / 5e-151 AT4G37170 806 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039117 [exp] 448 / 2e-149 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G075000 [exp] 895 / 0 AT2G41080 755 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 508 / 1e-171 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.017G091600 [exp] 489 / 5e-165 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G208000 [exp] 478 / 5e-161 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 482 / 7e-161 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.018G040100 [exp] 466 / 2e-155 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 466 / 6e-154 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G027800 [exp] 462 / 4e-153 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 463 / 6e-153 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G077700 [exp] 452 / 1e-151 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10022629 pacid=23178536 polypeptide=Lus10022629 locus=Lus10022629.g ID=Lus10022629.BGIv1.0 annot-version=v1.0 ATGGGCCAGCCATGTATCTCCGTCCTCCGTTTCTCCCGCCGGAATTTCTCCTCTGCATCAACTCCGTCCCCCCTTCACGAATTCACAAGCCTCTGCTATG GAGGACGAATCAAAGAAGCCTTCCACAAATTCAACTCCGAGATATGGCAAGACCCCGATCTCTTCTCCCACCTTATTCTCTCCTGCATTCCCACCAAGTC TCTCCTCCTCGGGAAGCAGCTCCATTCTTTGGTCCTCACTTCCGGCTACCGCAAAGAAAGATTCGTCACCAATCACCTCCTCAACATGTACTCCAAGCTC GGTGACTTGGGATCAGCCCTTTCCTGGTTCAACGGGCTTCCCAGGAGGAACGTCATGTCTGGTAACATTTTGATCAACGGCTATGTACAAGCTGGCGATT TGGAAGGTGCACGTAAGGTGTTCGACGAAATGCCTGAGAGAAATCTCGCCACTTGGAATGCTATGGTAACTGGCTCGATCCAGTTCGAGCGTAACGAGGA TGGATTGGGATTCTTCAGGGAAATGCATCAGTCTGGTTTTATGCCTGATGAGTTTGCTCTTGGTAGCGTACTTAGAGGCTGTGCTGGATTGAGAGCTTTG CATACTGGTAAGCAAGTTCATGACTATGTGATCAAATGTGGGTTTGAGTTACATTTAGTCGTCTGTAGCTCTTTGGCTCATATGTATATGAAAAGTGGAA GCTTGGAAGAAGGAGAGAAGATAATCAAATCAATGCCGATTCGTACTGTTGTCGCTTGGAATACTCTTATAGCAGGGAAAGCTCAGAACGGCTTCTCCGA AGGAGTTTTGGAAATGTACAACATGATGAAAATGTCAGGCTCCAGACCCGATAAGATCACATTTGTAAGCGTGATCAGTTCATGCTCCGAAATTGCGACT CTTAGTCAGGGCCAACAGATCCACGCCGAAGCAATCAAATTTGGTGCTGCCAATTCTGTCGTTGCAGTGAGCAGTTCGTTGATCAGCATGTATTCAAAAT GCGGATGTCTCGAGGATTCCTCGAATATTTTCTCGGATTGCGAGGATGGTGATAATGTGTTGTGGAGCTCCATGATTGCTGCTTATGGATTCCATGGAAA GGGAGAGGAAGCTATTCGTTTGTTCCACGAGATGCAAAGGAGAGGGTTAGAGGCTAATGAAGTCACATTCTTGAGTTTGCTTTATGCTTGTAGCCACTGT GGACTGAAGGAAGAAGGGATGCAGTTTTTCGAACAGATGGAGAATCGGTTCAGTTTGATACCAAGTGTGCAGCATTACACTTGTATGGTTGATTTGCTTG GTCGGTCAGGTCGGTTGGGTGAAGCTGAGTCGATGATAAAGTCTATGCCTGTGAAAGTCAAACCAGATGCTGCAATATGGAAAACTCTGTTATCTGCTTG TAAAATCCATAAAGATGCTGACATGGCGAAACGGATAGCTGGAGAAGTTCTGAAGCTTAAACCGGACGATGCAGCATCGTACGTACTGCTCGCAAATGCT CACGCATTCGCGAGGAGATGGACCGAAGTCTCGGAAGTGTGGAAGGAAATGAAACATAAGAATGTTAAGAAAGAGCCAGGTGTGAGCTGGCTGGAAGTGA AGAACAAGGTTCATCAGTTCTGTATGGCGGATAAGTACCATCCGGAATCGGAGGAGATCGAGGTGTATCTGAATGAGATGATTGAAGAGATCAAGGAGAA GAAAGGGTATGTTCCTGATACGGATTCTGTGATGCATGATATGTGTGTTGGTGAGAAAGAGTATAACTTGTTACATCATAGTGAGAAGTTGGCTGTAGCG TTTGGGCTTATGCGTAGTCCTCCTGGGGTGCCTATTAGGATTATGAAGAACTTGAGGATCTGTGGTGATTGTCATGTTGCGATGAGGTTGATTTCTGACG TTAGAGGGAGGGAGATTGTTGTTAGGGATGGTAGTAGGTTTCATCATTTTAAGGATGGCAAATGTTCTTGTGGAGATTACTGGTGA
AA sequence Show only first row Show all	>Lus10022629 pacid=23178536 polypeptide=Lus10022629 locus=Lus10022629.g ID=Lus10022629.BGIv1.0 annot-version=v1.0 MGQPCISVLRFSRRNFSSASTPSPLHEFTSLCYGGRIKEAFHKFNSEIWQDPDLFSHLILSCIPTKSLLLGKQLHSLVLTSGYRKERFVTNHLLNMYSKL GDLGSALSWFNGLPRRNVMSGNILINGYVQAGDLEGARKVFDEMPERNLATWNAMVTGSIQFERNEDGLGFFREMHQSGFMPDEFALGSVLRGCAGLRAL HTGKQVHDYVIKCGFELHLVVCSSLAHMYMKSGSLEEGEKIIKSMPIRTVVAWNTLIAGKAQNGFSEGVLEMYNMMKMSGSRPDKITFVSVISSCSEIAT LSQGQQIHAEAIKFGAANSVVAVSSSLISMYSKCGCLEDSSNIFSDCEDGDNVLWSSMIAAYGFHGKGEEAIRLFHEMQRRGLEANEVTFLSLLYACSHC GLKEEGMQFFEQMENRFSLIPSVQHYTCMVDLLGRSGRLGEAESMIKSMPVKVKPDAAIWKTLLSACKIHKDADMAKRIAGEVLKLKPDDAASYVLLANA HAFARRWTEVSEVWKEMKHKNVKKEPGVSWLEVKNKVHQFCMADKYHPESEEIEVYLNEMIEEIKEKKGYVPDTDSVMHDMCVGEKEYNLLHHSEKLAVA FGLMRSPPGVPIRIMKNLRICGDCHVAMRLISDVRGREIVVRDGSRFHHFKDGKCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10022629 [exp]	0	1
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10023863 [exp]	1.0	0.9069
AT1G34160			Tetratricopeptide repeat (TPR)...		Lus10029401 [exp]	2.4	0.8813
AT1G69350			Tetratricopeptide repeat (TPR)...		Lus10030415 [exp]	4.2	0.8795
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Lus10018063 [exp]	4.7	0.8347
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10038396 [exp]	5.0	0.8533
AT3G03580			Tetratricopeptide repeat (TPR)...		Lus10007806 [exp]	5.5	0.8332
AT3G55605			Mitochondrial glycoprotein fam...		Lus10001017 [exp]	6.0	0.8540
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10019731 [exp]	6.3	0.8250
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10040869 [exp]	8.7	0.8106
AT3G08820			Pentatricopeptide repeat (PPR)...		Lus10029436 [exp]	9.2	0.8473

Compare expression of checked genes

Lus10022629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.