Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17120 251 / 5e-81 LYM2 lysm domain GPI-anchored protein 2 precursor (.1) AT1G21880 117 / 3e-30 LYM1 lysm domain GPI-anchored protein 1 precursor (.1.2) AT1G77630 118 / 1e-29 LYM3 lysin-motif \(LysM\) domain protein 3, Peptidoglycan-binding LysM domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003326 [exp] 648 / 0 AT2G17120 255 / 1e-82 lysm domain GPI-anchored protein 2 precursor (.1) Lus10023945 [exp] 405 / 5e-141 AT2G17120 280 / 4e-92 lysm domain GPI-anchored protein 2 precursor (.1) Lus10014441 [exp] 398 / 1e-130 AT4G38380 501 / 2e-167 MATE efflux family protein (.1) Lus10026372 [exp] 338 / 8e-115 AT2G17120 249 / 3e-80 lysm domain GPI-anchored protein 2 precursor (.1) Lus10014442 [exp] 147 / 2e-42 AT2G17120 223 / 2e-72 lysm domain GPI-anchored protein 2 precursor (.1) Lus10042285 [exp] 138 / 1e-36 AT1G73470 152 / 8e-42 unknown protein Lus10025643 [exp] 121 / 8e-31 AT1G21880 547 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2) Lus10018191 [exp] 120 / 1e-30 AT1G21880 550 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2) Lus10023946 [exp] 103 / 4e-27 AT2G17120 138 / 6e-41 lysm domain GPI-anchored protein 2 precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G183500 [exp] 347 / 2e-118 AT2G17120 318 / 3e-107 lysm domain GPI-anchored protein 2 precursor (.1) Potri.009G143300 [exp] 330 / 6e-112 AT2G17120 311 / 1e-104 lysm domain GPI-anchored protein 2 precursor (.1) Potri.005G176700 [exp] 118 / 7e-30 AT1G21880 548 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2) Potri.002G084800 [exp] 117 / 1e-29 AT1G21880 554 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2) Potri.015G085350 [exp] 52 / 1e-07 AT2G23770 125 / 7e-33 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160600 [exp] 49 / 2e-06 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.008G160501 [exp] 48 / 4e-06 AT2G23770 66 / 3e-12 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.009G010300 [exp] 47 / 1e-05 AT2G23770 234 / 3e-68 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.001G190200 [exp] 42 / 0.0004 AT1G51940 824 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128501 [exp] 42 / 0.0004 AT2G23770 71 / 4e-14 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0187 [flax] [poplar] LysM PF01476 [flax] [poplar] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Lus10022630 pacid=23178503 polypeptide=Lus10022630 locus=Lus10022630.g ID=Lus10022630.BGIv1.0 annot-version=v1.0 ATGGAACACCACCACAACAATCCCCTCTCCCTCCTCCTTATCCTCACCCTCACCACCGTATCCACCTTCTCCGCCGCCGCCTCGTTCAAGTGCACCACCA CGCCTGCGAAATGCCACGCCTTGATCGACTACATCACCCCGTCGCACGACACGACGTTCGCCGCCGTCCAGTCCCTCTTCGAGATCCGGAACCTCCGAAT GCTCCTCGGCGCCAACAACTTACCCCTCTCGACTTCTCCGAACGACACCTTAACGTCCAGGCAGACCCTGAAGATCCCGTTCCCCTGCCTCTGCAAAGGC CGTAAGGGCACCGGAGTTTCGAACAAGCGGCCGATGTACAAGGTTGAGAAGTGGGACAAGGATCTTCACGATATTGCGACGAGGGTGTTCGCCGGAGTTG TGACGGGAGAGGACATTGCCGCTGCTAACGACGTTTCCGATAAGGTGAAGGTTCACGTCGGGATGAAGCTGTGGATTCCTCTGCCGTGTAGCTGCGATGA TGTGGAGGGGAACAAGGTGGTCCACTATGGACACGTGGCGGAAGCTGGGAGCTCGTTGGATGGGATTGCTGACACGTATGGTGCCAGCGTGGATGTTCTG AAGGAGCTTAATGGGTTGAAGGATGGGTACGGTCTGACCGCTGGCCAAGTTCTTGATGTCCCGATCAGAGCTTGCAATTCGTCTATAAGAGACGATTCCG TGGACTCCAAGTTTCTAGTGGCTAATGGGACTTACGCCTTCACCTCTCACAATTGTGTCCAATGCAATTGCGACTCTTCAAACAATTGGACGCTACATTG TTATGCATCCGGGGTGAAACCATCGGACTGGTCGACTTGCCCTCCGATGCAATGCGGCGAAGGAAAGAATACCGTGGCGCTTGGAAACTCCACCGCCTCC GTTTGCGGTGGCGCCACCTGCTCCTACGCCGGCTTCTCTTCCAATATAACCGTCTTCACAACTTTCCCCGGAACTTGCAACTCTAAAAATGGGGCTGGTG GTAGGATATTGCCAAAATGTTTGAACTCGGGCTTTTTCTTGTGGCTGGTTCATTTGTTACTTCATCAACTCTCCAGGTGA
AA sequence Show only first row Show all	>Lus10022630 pacid=23178503 polypeptide=Lus10022630 locus=Lus10022630.g ID=Lus10022630.BGIv1.0 annot-version=v1.0 MEHHHNNPLSLLLILTLTTVSTFSAAASFKCTTTPAKCHALIDYITPSHDTTFAAVQSLFEIRNLRMLLGANNLPLSTSPNDTLTSRQTLKIPFPCLCKG RKGTGVSNKRPMYKVEKWDKDLHDIATRVFAGVVTGEDIAAANDVSDKVKVHVGMKLWIPLPCSCDDVEGNKVVHYGHVAEAGSSLDGIADTYGASVDVL KELNGLKDGYGLTAGQVLDVPIRACNSSIRDDSVDSKFLVANGTYAFTSHNCVQCNCDSSNNWTLHCYASGVKPSDWSTCPPMQCGEGKNTVALGNSTAS VCGGATCSYAGFSSNITVFTTFPGTCNSKNGAGGRILPKCLNSGFFLWLVHLLLHQLSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Lus10022630 [exp]	0	1

Compare expression of checked genes

Lus10022630 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.