Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35250 638 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G32100 57 / 1e-08 ATPRR1 pinoresinol reductase 1 (.1) AT2G34460 54 / 4e-08 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G16720 50 / 2e-06 HCF173 high chlorophyll fluorescence phenotype 173 (.1) AT4G13660 48 / 7e-06 ATPRR2 pinoresinol reductase 2 (.1) AT2G37660 47 / 2e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003328 [exp] 741 / 0 AT4G35250 653 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012145 [exp] 60 / 8e-10 AT1G32100 419 / 2e-148 pinoresinol reductase 1 (.1) Lus10007599 [exp] 56 / 4e-08 AT5G48790 413 / 3e-141 Domain of unknown function (DUF1995) (.1) Lus10012143 [exp] 54 / 5e-08 AT1G32100 447 / 1e-159 pinoresinol reductase 1 (.1) Lus10010403 [exp] 53 / 1e-07 AT1G32100 446 / 1e-158 pinoresinol reductase 1 (.1) Lus10010846 [exp] 52 / 5e-07 AT2G37660 451 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024383 [exp] 50 / 1e-06 AT2G37660 458 / 1e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004936 [exp] 48 / 6e-06 AT2G34460 399 / 4e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040884 [exp] 45 / 5e-05 AT2G34460 401 / 7e-142 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G183100 [exp] 639 / 0 AT4G35250 650 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G143000 [exp] 624 / 0 AT4G35250 642 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G133300 [exp] 55 / 3e-08 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1) Potri.014G000400 [exp] 54 / 1e-07 AT1G16720 863 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Potri.003G100200 [exp] 51 / 5e-07 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1) Potri.007G003500 [exp] 50 / 2e-06 AT1G16720 852 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Potri.011G079600 [exp] 48 / 6e-06 AT2G34460 370 / 6e-130 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G086800 [exp] 47 / 1e-05 AT2G37660 450 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G129800 [exp] 45 / 5e-05 AT1G75290 241 / 2e-77 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147702 [exp] 44 / 8e-05 AT2G45400 317 / 4e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Lus10022632 pacid=23178604 polypeptide=Lus10022632 locus=Lus10022632.g ID=Lus10022632.BGIv1.0 annot-version=v1.0 ATGGCACTGCGCCTTCCAGCTCAGGTCGCCAACGGCGGCGGACGCCTCCCTAGCCAGCTCCCCGCCGTTTCATCGCCTTCTTCCCTCTCCCGGCGCTCCA ATTTCGCTCCAAAAACCCTCTCTCTCTTCTCCGGGAGTCGATACGGCCGGCTGACGGTGAGCTGCAGTACTTCGGCGGGGGCGAATTTGGCGCCGGGGAC TCCCGGCCGGCCGAGGAGCATCCTCGTCGCCGGAGCGACCGGGACTCTAGGCAGGCAAATCGTGCGGAGAGCACTCGATGAAGGGTATGAAGTCCGGTGT CTTGTCAGGCCTCGTCCTGCTCCGGCGGATTTCCTCCGTGATTGGGGCGCCACTGTCGTCAATGGGGATCTGAGCAGGCCGGAGACGATTCCGGCGACAT TGGTTGGAGTTCATACGATTATTGATTGCGCCACTGGCCGGCCGGAAGAACCGATCAAAACGGTAGATTGGGAAGGGAAAGTGGCACTGATCCAGTGTGC AAAGGCAATGGGGATACAGAAATATGTATTCTATTCGATCCACAACTGCGACAAACATCCAGAGGTTCCATTAATGGAGATCAAGTACTGCACTGAGAAG TTCCTCAAGGACTCTGGCCTTCCTCACATCACTATACGCCTATGTGGCTTCATGCAAGGTCTAATCGGGCAATACGCAGTGCCTATACTCGAGGAGAAGT CCGTGTGGGGCACCGACGCTCCCACACGAATTGCCTACATGGACACCCAGGATATAGCGCGGTTGACGTTCATAGCGTTGAGGAACGACAAGATGAACGG AAAGCTCCTGACATTTGCCGGGCCTCGAGCTTGGACGACACAAGAAGTGATAGCATTGTGTGAGAGACTTGCGGGGCAGGATGCCAACGTGACCACAGTC CCGGTCTCGATCCTGAGGTTCACCCGGCAACTCACTCGGATTTTCGAGTGGACAAGTGATGTCGCGGACCGGCTAGCATTCTCGGAGGTGCTGTCGAGCG ACACGGTGTTCTCGGTCCCCATGGGGGAGACGTACAGCATGCTAGGGGTAGACCAGAAGGAGATTGCGTCATTGGAGAAGTACTTGCAGGACTATTTCTC TAATATTTTGAAGAAGTTGAAGGACCTCAAAGCTCAGTCTAAGCAATCTGACATTTACTTCTGA
AA sequence Show only first row Show all	>Lus10022632 pacid=23178604 polypeptide=Lus10022632 locus=Lus10022632.g ID=Lus10022632.BGIv1.0 annot-version=v1.0 MALRLPAQVANGGGRLPSQLPAVSSPSSLSRRSNFAPKTLSLFSGSRYGRLTVSCSTSAGANLAPGTPGRPRSILVAGATGTLGRQIVRRALDEGYEVRC LVRPRPAPADFLRDWGATVVNGDLSRPETIPATLVGVHTIIDCATGRPEEPIKTVDWEGKVALIQCAKAMGIQKYVFYSIHNCDKHPEVPLMEIKYCTEK FLKDSGLPHITIRLCGFMQGLIGQYAVPILEEKSVWGTDAPTRIAYMDTQDIARLTFIALRNDKMNGKLLTFAGPRAWTTQEVIALCERLAGQDANVTTV PVSILRFTRQLTRIFEWTSDVADRLAFSEVLSSDTVFSVPMGETYSMLGVDQKEIASLEKYLQDYFSNILKKLKDLKAQSKQSDIYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35250			NAD(P)-binding Rossmann-fold s...		Lus10022632 [exp]	0	1
AT1G71500			Rieske (2Fe-2S) domain-contain...		Lus10001278 [exp]	2.0	0.9673
AT1G71500			Rieske (2Fe-2S) domain-contain...		Lus10009471 [exp]	2.4	0.9668
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10029680 [exp]	3.0	0.9620
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10042720 [exp]	3.5	0.9581
AT1G74730			Protein of unknown function (D...		Lus10042179 [exp]	3.9	0.9594
AT1G73060		LPA3	Low PSII Accumulation 3 (.1)		Lus10026089 [exp]	4.2	0.9497
AT4G39970			Haloacid dehalogenase-like hyd...		Lus10000633 [exp]	4.9	0.9530
AT5G17670			alpha/beta-Hydrolases superfam...		Lus10005666 [exp]	5.5	0.9373
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Lus10021115 [exp]	5.7	0.9613
AT4G35250			NAD(P)-binding Rossmann-fold s...		Lus10003328 [exp]	5.9	0.9580

Compare expression of checked genes

Lus10022632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.